miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 57968 0.7 0.503941
Target:  5'- gUGCCUaucgucaucGgaGUCCCCGCgcgGCGGCCg -3'
miRNA:   3'- gACGGAac-------UgaCGGGGGCGa--UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 127818 0.7 0.513385
Target:  5'- -aGCCaucucccGACagcguUGCCUCCGCgGCGGCCg -3'
miRNA:   3'- gaCGGaa-----CUG-----ACGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 158814 0.7 0.5229
Target:  5'- -cGCCgaGGCcuUGCCCCCGCUcuACaGUCa -3'
miRNA:   3'- gaCGGaaCUG--ACGGGGGCGA--UGcCGG- -5'
24458 5' -59.9 NC_005264.1 + 75207 0.7 0.532483
Target:  5'- -cGCCccacgcGGCUGCaucggCCCUGCgcgGCGGCCg -3'
miRNA:   3'- gaCGGaa----CUGACG-----GGGGCGa--UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 64322 0.69 0.55183
Target:  5'- gCUGCCaaGACUGaggcCCCCCGU--CGGCg -3'
miRNA:   3'- -GACGGaaCUGAC----GGGGGCGauGCCGg -5'
24458 5' -59.9 NC_005264.1 + 154840 0.69 0.561585
Target:  5'- -cGCCUcuGCcGgCCCCGCaaugGCGGCCc -3'
miRNA:   3'- gaCGGAacUGaCgGGGGCGa---UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 35814 0.69 0.561585
Target:  5'- -cGCCUcuGCcGgCCCCGCaaugGCGGCCc -3'
miRNA:   3'- gaCGGAacUGaCgGGGGCGa---UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 56807 0.69 0.571385
Target:  5'- aUGCUUUGucCUGCgCUgCGCgGCGGCCc -3'
miRNA:   3'- gACGGAACu-GACG-GGgGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 79614 0.69 0.571385
Target:  5'- -gGCCUaGAC-GCCCaCgCGCaACGGCCc -3'
miRNA:   3'- gaCGGAaCUGaCGGG-G-GCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160161 0.69 0.581227
Target:  5'- -cGCCaccacGCUGCCCUCGCggucGgGGCCa -3'
miRNA:   3'- gaCGGaac--UGACGGGGGCGa---UgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 85627 0.69 0.581227
Target:  5'- aUGCCguuGCUGCagCCGCUaAUGGCCg -3'
miRNA:   3'- gACGGaacUGACGggGGCGA-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 41134 0.69 0.581227
Target:  5'- -cGCCaccacGCUGCCCUCGCggucGgGGCCa -3'
miRNA:   3'- gaCGGaac--UGACGGGGGCGa---UgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 71415 0.69 0.598032
Target:  5'- -gGCUaUGACacagacuccgccggUGCCCCggCGCUAgGGCCa -3'
miRNA:   3'- gaCGGaACUG--------------ACGGGG--GCGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 141403 0.69 0.601006
Target:  5'- -aGCCccGACcacuggaguaGCUCCUGUUACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa---------CGGGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 19094 0.68 0.610932
Target:  5'- -aGCCagGACUGCa-CCGCgGCGGCg -3'
miRNA:   3'- gaCGGaaCUGACGggGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 24843 0.68 0.620872
Target:  5'- gUGCC---GCUGCUUCCGC-ACGGCg -3'
miRNA:   3'- gACGGaacUGACGGGGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 100391 0.68 0.630821
Target:  5'- aUGCCgcuGCUGCgCCCCGUauUGGUCg -3'
miRNA:   3'- gACGGaacUGACG-GGGGCGauGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125265 0.68 0.640771
Target:  5'- -cGCCgcgaGACUugccGCCUCCGUcGCGGUCg -3'
miRNA:   3'- gaCGGaa--CUGA----CGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 128980 0.68 0.640771
Target:  5'- -cGCCggcgaggGACUGCCggaCCCG-UGCGGCg -3'
miRNA:   3'- gaCGGaa-----CUGACGG---GGGCgAUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 6238 0.68 0.640771
Target:  5'- -cGCCgcgaGACUugccGCCUCCGUcGCGGUCg -3'
miRNA:   3'- gaCGGaa--CUGA----CGGGGGCGaUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.