miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 69833 1.12 0.000811
Target:  5'- aCUGCCUUGACUGCCCCCGCUACGGCCg -3'
miRNA:   3'- -GACGGAACUGACGGGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 48162 0.79 0.164595
Target:  5'- cCUGCUcggcgUGGCUGCaCCCCcgcuucauggagacGCUACGGCCg -3'
miRNA:   3'- -GACGGa----ACUGACG-GGGG--------------CGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 6902 0.77 0.203519
Target:  5'- uUGCCUUGGCUGCUgCCGUUgcgcgaaagacucgaACGGCUc -3'
miRNA:   3'- gACGGAACUGACGGgGGCGA---------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125928 0.77 0.203519
Target:  5'- uUGCCUUGGCUGCUgCCGUUgcgcgaaagacucgaACGGCUc -3'
miRNA:   3'- gACGGAACUGACGGgGGCGA---------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 97894 0.75 0.267594
Target:  5'- uCUGCUUUGGCUGUaCCCCG--ACGGCUg -3'
miRNA:   3'- -GACGGAACUGACG-GGGGCgaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 109506 0.75 0.293197
Target:  5'- -gGCUgguugGGCUGCCCCUGCU--GGCCa -3'
miRNA:   3'- gaCGGaa---CUGACGGGGGCGAugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 151055 0.74 0.3067
Target:  5'- -cGCCUcgGGCUGCCCCgGagUGCGaGCCa -3'
miRNA:   3'- gaCGGAa-CUGACGGGGgCg-AUGC-CGG- -5'
24458 5' -59.9 NC_005264.1 + 32028 0.74 0.3067
Target:  5'- -cGCCUcgGGCUGCCCCgGagUGCGaGCCa -3'
miRNA:   3'- gaCGGAa-CUGACGGGGgCg-AUGC-CGG- -5'
24458 5' -59.9 NC_005264.1 + 37166 0.74 0.313628
Target:  5'- uCUGCCggagcuuccgGACaugUGCCCCCGCgu-GGCCg -3'
miRNA:   3'- -GACGGaa--------CUG---ACGGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 137676 0.74 0.313628
Target:  5'- uUGCCUuccgUGGCcacGUCCUCGCUcACGGCCa -3'
miRNA:   3'- gACGGA----ACUGa--CGGGGGCGA-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 156193 0.74 0.313628
Target:  5'- uCUGCCggagcuuccgGACaugUGCCCCCGCgu-GGCCg -3'
miRNA:   3'- -GACGGaa--------CUG---ACGGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 40823 0.73 0.365414
Target:  5'- -cGCCgaGACUcaagaUCCCGCUAUGGCCg -3'
miRNA:   3'- gaCGGaaCUGAcg---GGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 87724 0.72 0.389346
Target:  5'- -gGCCauUUGACUGCgCCCCaGCU-CGGCg -3'
miRNA:   3'- gaCGG--AACUGACG-GGGG-CGAuGCCGg -5'
24458 5' -59.9 NC_005264.1 + 69131 0.72 0.414282
Target:  5'- uCUGCCgccUGAUcugugGCCCgCGCUACuGCCa -3'
miRNA:   3'- -GACGGa--ACUGa----CGGGgGCGAUGcCGG- -5'
24458 5' -59.9 NC_005264.1 + 136682 0.71 0.440175
Target:  5'- gUGCCgcGAaaGUCCUCGCcGCGGCCu -3'
miRNA:   3'- gACGGaaCUgaCGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 67030 0.71 0.440175
Target:  5'- -gGCCUUGcGCagGCCCCCGaCguaagGCGGCg -3'
miRNA:   3'- gaCGGAAC-UGa-CGGGGGC-Ga----UGCCGg -5'
24458 5' -59.9 NC_005264.1 + 61001 0.71 0.466965
Target:  5'- -gGCCUcGuucuCUGCCUCgGCUuCGGCCa -3'
miRNA:   3'- gaCGGAaCu---GACGGGGgCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 6217 0.71 0.476082
Target:  5'- --cCUUUGAC--CCCCCGCcGCGGCCg -3'
miRNA:   3'- gacGGAACUGacGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125244 0.71 0.476082
Target:  5'- --cCUUUGAC--CCCCCGCcGCGGCCg -3'
miRNA:   3'- gacGGAACUGacGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 67437 0.71 0.476082
Target:  5'- -cGCCUaucUGAa-GCCCCUGCaccagcGCGGCCa -3'
miRNA:   3'- gaCGGA---ACUgaCGGGGGCGa-----UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.