miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 2842 0.66 0.748062
Target:  5'- -gGCCggucgcGCUcgcGCCgucgCCCGCUGCGGCUg -3'
miRNA:   3'- gaCGGaac---UGA---CGG----GGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 4114 0.66 0.747122
Target:  5'- -gGCCgaGGgUGUCCCCuCUgccaaacACGGCCg -3'
miRNA:   3'- gaCGGaaCUgACGGGGGcGA-------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 6217 0.71 0.476082
Target:  5'- --cCUUUGAC--CCCCCGCcGCGGCCg -3'
miRNA:   3'- gacGGAACUGacGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 6238 0.68 0.640771
Target:  5'- -cGCCgcgaGACUugccGCCUCCGUcGCGGUCg -3'
miRNA:   3'- gaCGGaa--CUGA----CGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 6902 0.77 0.203519
Target:  5'- uUGCCUUGGCUGCUgCCGUUgcgcgaaagacucgaACGGCUc -3'
miRNA:   3'- gACGGAACUGACGGgGGCGA---------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 7275 0.66 0.765728
Target:  5'- -aGCCUUGGCgacgGagagCCCCGCcagugcgUAUGGCUu -3'
miRNA:   3'- gaCGGAACUGa---Cg---GGGGCG-------AUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 12143 0.66 0.738621
Target:  5'- -cGCCggcGCUGCCCgUUGCUGgGGUCu -3'
miRNA:   3'- gaCGGaacUGACGGG-GGCGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 19094 0.68 0.610932
Target:  5'- -aGCCagGACUGCa-CCGCgGCGGCg -3'
miRNA:   3'- gaCGGaaCUGACGggGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 19864 0.67 0.719485
Target:  5'- -cGCCUca--UGCCCgagagaCCGCcGCGGCCg -3'
miRNA:   3'- gaCGGAacugACGGG------GGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 23391 0.67 0.670551
Target:  5'- -cGCC-UGGCcGCCCUCuuGUgACGGCCg -3'
miRNA:   3'- gaCGGaACUGaCGGGGG--CGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 23509 0.66 0.738621
Target:  5'- -aGCCUUc-CU-CCCCCG-UACGGCCc -3'
miRNA:   3'- gaCGGAAcuGAcGGGGGCgAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 24843 0.68 0.620872
Target:  5'- gUGCC---GCUGCUUCCGC-ACGGCg -3'
miRNA:   3'- gACGGaacUGACGGGGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 30451 0.66 0.738621
Target:  5'- -aGCCgcgg--GCCCCgGCU-CGGCCc -3'
miRNA:   3'- gaCGGaacugaCGGGGgCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 32028 0.74 0.3067
Target:  5'- -cGCCUcgGGCUGCCCCgGagUGCGaGCCa -3'
miRNA:   3'- gaCGGAa-CUGACGGGGgCg-AUGC-CGG- -5'
24458 5' -59.9 NC_005264.1 + 34121 0.66 0.738621
Target:  5'- -gGCCUUcGCUGCCUCUGgUgACGGgCg -3'
miRNA:   3'- gaCGGAAcUGACGGGGGCgA-UGCCgG- -5'
24458 5' -59.9 NC_005264.1 + 35814 0.69 0.561585
Target:  5'- -cGCCUcuGCcGgCCCCGCaaugGCGGCCc -3'
miRNA:   3'- gaCGGAacUGaCgGGGGCGa---UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 36077 0.66 0.765728
Target:  5'- gCUGCCgucGCUGUCCCUcucuucgGC-GCGGCUg -3'
miRNA:   3'- -GACGGaacUGACGGGGG-------CGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 37166 0.74 0.313628
Target:  5'- uCUGCCggagcuuccgGACaugUGCCCCCGCgu-GGCCg -3'
miRNA:   3'- -GACGGaa--------CUG---ACGGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 40823 0.73 0.365414
Target:  5'- -cGCCgaGACUcaagaUCCCGCUAUGGCCg -3'
miRNA:   3'- gaCGGaaCUGAcg---GGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 41134 0.69 0.581227
Target:  5'- -cGCCaccacGCUGCCCUCGCggucGgGGCCa -3'
miRNA:   3'- gaCGGaac--UGACGGGGGCGa---UgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.