miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 141403 0.69 0.601006
Target:  5'- -aGCCccGACcacuggaguaGCUCCUGUUACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa---------CGGGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 57968 0.7 0.503941
Target:  5'- gUGCCUaucgucaucGgaGUCCCCGCgcgGCGGCCg -3'
miRNA:   3'- gACGGAac-------UgaCGGGGGCGa--UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 75207 0.7 0.532483
Target:  5'- -cGCCccacgcGGCUGCaucggCCCUGCgcgGCGGCCg -3'
miRNA:   3'- gaCGGaa----CUGACG-----GGGGCGa--UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 64322 0.69 0.55183
Target:  5'- gCUGCCaaGACUGaggcCCCCCGU--CGGCg -3'
miRNA:   3'- -GACGGaaCUGAC----GGGGGCGauGCCGg -5'
24458 5' -59.9 NC_005264.1 + 154840 0.69 0.561585
Target:  5'- -cGCCUcuGCcGgCCCCGCaaugGCGGCCc -3'
miRNA:   3'- gaCGGAacUGaCgGGGGCGa---UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 79614 0.69 0.571385
Target:  5'- -gGCCUaGAC-GCCCaCgCGCaACGGCCc -3'
miRNA:   3'- gaCGGAaCUGaCGGG-G-GCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 85627 0.69 0.581227
Target:  5'- aUGCCguuGCUGCagCCGCUaAUGGCCg -3'
miRNA:   3'- gACGGaacUGACGggGGCGA-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160161 0.69 0.581227
Target:  5'- -cGCCaccacGCUGCCCUCGCggucGgGGCCa -3'
miRNA:   3'- gaCGGaac--UGACGGGGGCGa---UgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 71415 0.69 0.598032
Target:  5'- -gGCUaUGACacagacuccgccggUGCCCCggCGCUAgGGCCa -3'
miRNA:   3'- gaCGGaACUG--------------ACGGGG--GCGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125244 0.71 0.476082
Target:  5'- --cCUUUGAC--CCCCCGCcGCGGCCg -3'
miRNA:   3'- gacGGAACUGacGGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 67437 0.71 0.476082
Target:  5'- -cGCCUaucUGAa-GCCCCUGCaccagcGCGGCCa -3'
miRNA:   3'- gaCGGA---ACUgaCGGGGGCGa-----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 61001 0.71 0.466965
Target:  5'- -gGCCUcGuucuCUGCCUCgGCUuCGGCCa -3'
miRNA:   3'- gaCGGAaCu---GACGGGGgCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125928 0.77 0.203519
Target:  5'- uUGCCUUGGCUGCUgCCGUUgcgcgaaagacucgaACGGCUc -3'
miRNA:   3'- gACGGAACUGACGGgGGCGA---------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 109506 0.75 0.293197
Target:  5'- -gGCUgguugGGCUGCCCCUGCU--GGCCa -3'
miRNA:   3'- gaCGGaa---CUGACGGGGGCGAugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 151055 0.74 0.3067
Target:  5'- -cGCCUcgGGCUGCCCCgGagUGCGaGCCa -3'
miRNA:   3'- gaCGGAa-CUGACGGGGgCg-AUGC-CGG- -5'
24458 5' -59.9 NC_005264.1 + 156193 0.74 0.313628
Target:  5'- uCUGCCggagcuuccgGACaugUGCCCCCGCgu-GGCCg -3'
miRNA:   3'- -GACGGaa--------CUG---ACGGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 137676 0.74 0.313628
Target:  5'- uUGCCUuccgUGGCcacGUCCUCGCUcACGGCCa -3'
miRNA:   3'- gACGGA----ACUGa--CGGGGGCGA-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 40823 0.73 0.365414
Target:  5'- -cGCCgaGACUcaagaUCCCGCUAUGGCCg -3'
miRNA:   3'- gaCGGaaCUGAcg---GGGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 67030 0.71 0.440175
Target:  5'- -gGCCUUGcGCagGCCCCCGaCguaagGCGGCg -3'
miRNA:   3'- gaCGGAAC-UGa-CGGGGGC-Ga----UGCCGg -5'
24458 5' -59.9 NC_005264.1 + 136682 0.71 0.440175
Target:  5'- gUGCCgcGAaaGUCCUCGCcGCGGCCu -3'
miRNA:   3'- gACGGaaCUgaCGGGGGCGaUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.