miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 127319 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 54251 0.7 0.977724
Target:  5'- cGCGCCaaCGUGuCGAGugGGAgcgGGGCGAGGa -3'
miRNA:   3'- -CGCGG--GUAC-GCUCugUUU---UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 18427 0.7 0.981915
Target:  5'- cGCGCCCucucgcucggcGCGGGGuCGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGua---------CGCUCU-GUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 74565 0.7 0.982342
Target:  5'- gGCGCCCAUGU-AGuACGAuucGGACAGGc -3'
miRNA:   3'- -CGCGGGUACGcUC-UGUUu--UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 148563 0.7 0.982342
Target:  5'- -aGCCCAUGCcuuauuuguGGGACAcuAGAGACGc-- -3'
miRNA:   3'- cgCGGGUACG---------CUCUGU--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 70592 0.7 0.983171
Target:  5'- aGCGCgCuugGCGAGGCGGGccuucagagcaugcuGGACGAGAa -3'
miRNA:   3'- -CGCGgGua-CGCUCUGUUU---------------UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 116075 0.7 0.983774
Target:  5'- cGCGCCCAaGCGAagaucugguccugcGACgGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGUaCGCU--------------CUG-UUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 49911 0.7 0.98436
Target:  5'- cGCGCCCAaaucccgcugGCGGcGACuGAGGAUGAGAa -3'
miRNA:   3'- -CGCGGGUa---------CGCU-CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 157839 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 38813 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 109598 0.69 0.986199
Target:  5'- cGCGCCC--GCGGGGCAcggAAAG-CAAAu -3'
miRNA:   3'- -CGCGGGuaCGCUCUGU---UUUCuGUUUu -5'
24461 5' -48.4 NC_005264.1 + 64301 0.69 0.986199
Target:  5'- cGCGUCCAUGCcuccGCAGAGGcCAGAAa -3'
miRNA:   3'- -CGCGGGUACGcuc-UGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 3676 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122703 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 131738 0.69 0.987867
Target:  5'- gGCGCUacaAUGCGcuacggcGACAAAAGACAu-- -3'
miRNA:   3'- -CGCGGg--UACGCu------CUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 27901 0.69 0.987867
Target:  5'- aGCGUCUcgGCGAGGguGAGcGACGAc- -3'
miRNA:   3'- -CGCGGGuaCGCUCUguUUU-CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 104432 0.69 0.989375
Target:  5'- aGCGCuaCCGUGgGGGGCGAAgucccagucuuGGACAAu- -3'
miRNA:   3'- -CGCG--GGUACgCUCUGUUU-----------UCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 159579 0.69 0.990732
Target:  5'- aUGCCCAcccaccgagaaGCGAGACGAgcGACGGAc -3'
miRNA:   3'- cGCGGGUa----------CGCUCUGUUuuCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 30410 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5'
24461 5' -48.4 NC_005264.1 + 149437 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.