Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24461 | 5' | -48.4 | NC_005264.1 | + | 244 | 0.66 | 0.998973 |
Target: 5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3' miRNA: 3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 1006 | 0.82 | 0.494413 |
Target: 5'- cGCGCCCGUGUG-GugGGGGGGCAGGGg -3' miRNA: 3'- -CGCGGGUACGCuCugUUUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 2203 | 0.69 | 0.992399 |
Target: 5'- gGCGCCCAUGCGcGcUAAggguuuccccuaaccGAGACGAc- -3' miRNA: 3'- -CGCGGGUACGCuCuGUU---------------UUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 2930 | 0.67 | 0.997351 |
Target: 5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3' miRNA: 3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 3676 | 0.69 | 0.987708 |
Target: 5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3' miRNA: 3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 3823 | 0.68 | 0.994858 |
Target: 5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3' miRNA: 3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 4032 | 0.66 | 0.998745 |
Target: 5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3' miRNA: 3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 5861 | 0.68 | 0.995612 |
Target: 5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3' miRNA: 3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 6678 | 0.68 | 0.995612 |
Target: 5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3' miRNA: 3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 8292 | 0.71 | 0.969212 |
Target: 5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3' miRNA: 3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 12047 | 0.68 | 0.994777 |
Target: 5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3' miRNA: 3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 12994 | 0.67 | 0.99685 |
Target: 5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3' miRNA: 3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 13283 | 0.66 | 0.998745 |
Target: 5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3' miRNA: 3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 13562 | 0.66 | 0.999325 |
Target: 5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3' miRNA: 3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 14893 | 0.72 | 0.939405 |
Target: 5'- cGCGUCCAUGCuuauGGACGuggagcugccauucAAGGACAAGAu -3' miRNA: 3'- -CGCGGGUACGc---UCUGU--------------UUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 16029 | 0.68 | 0.994858 |
Target: 5'- cGCGCCUccGUGCagucGAgGGAAGACGGGAg -3' miRNA: 3'- -CGCGGG--UACGcu--CUgUUUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 16392 | 0.66 | 0.999325 |
Target: 5'- aUGCCCGUgGCGcauuGGCAcucggGGAGGCAAGGg -3' miRNA: 3'- cGCGGGUA-CGCu---CUGU-----UUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 16680 | 0.72 | 0.949834 |
Target: 5'- aCGUgCAUGCGAGGCAucgacacGAAGACGu-- -3' miRNA: 3'- cGCGgGUACGCUCUGU-------UUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 18427 | 0.7 | 0.981915 |
Target: 5'- cGCGCCCucucgcucggcGCGGGGuCGAAGGACGu-- -3' miRNA: 3'- -CGCGGGua---------CGCUCU-GUUUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 19491 | 0.67 | 0.998156 |
Target: 5'- cGCGCaCC-UGCGAGGuuccagcugcCAGAcGACGAGAa -3' miRNA: 3'- -CGCG-GGuACGCUCU----------GUUUuCUGUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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