Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24462 | 5' | -57.5 | NC_005264.1 | + | 34095 | 0.71 | 0.557971 |
Target: 5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3' miRNA: 3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 36527 | 0.67 | 0.777809 |
Target: 5'- gGCGGGcGCAGGAgccaucGGCcgcGCGCCCg -3' miRNA: 3'- aCGUCCcCGUCUUa-----UCGagaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 37090 | 0.66 | 0.847191 |
Target: 5'- cGCGGcGGCAGuuccgGGgaCgGCGCCCc -3' miRNA: 3'- aCGUCcCCGUCuua--UCgaGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 37953 | 0.67 | 0.787027 |
Target: 5'- aUGgGGGGGCGGu-UAGCcagUUGCGCg- -3' miRNA: 3'- -ACgUCCCCGUCuuAUCGa--GACGCGgg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 39487 | 0.68 | 0.749411 |
Target: 5'- cGcCAGGGGCA----GGC-CUGCGCUg -3' miRNA: 3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 43510 | 0.68 | 0.720088 |
Target: 5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3' miRNA: 3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 43796 | 0.66 | 0.843986 |
Target: 5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3' miRNA: 3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 58010 | 0.66 | 0.830862 |
Target: 5'- aGCGGccccGGCGGAcaGGCcgUCgugcgGCGCCCg -3' miRNA: 3'- aCGUCc---CCGUCUuaUCG--AGa----CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 61813 | 0.69 | 0.67998 |
Target: 5'- cGCGGGcaucgccgGGCAGugccUGGCUCgccUGCGCCg -3' miRNA: 3'- aCGUCC--------CCGUCuu--AUCGAG---ACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 62606 | 0.67 | 0.787027 |
Target: 5'- aGUAGcGGcGCGGAcguuccgAGCaaCUGCGCCCc -3' miRNA: 3'- aCGUC-CC-CGUCUua-----UCGa-GACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 66260 | 0.69 | 0.690088 |
Target: 5'- cUGcCAGGGcCAGAucgcGCUCUGCGUCg -3' miRNA: 3'- -AC-GUCCCcGUCUuau-CGAGACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 67351 | 0.74 | 0.390517 |
Target: 5'- cGCgaAGaGGGCGGAaaacGUAGCgcccgcgcucgCUGCGCCCg -3' miRNA: 3'- aCG--UC-CCCGUCU----UAUCGa----------GACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 67682 | 1.12 | 0.001128 |
Target: 5'- uUGCAGGGGCAGAAUAGCUCUGCGCCCg -3' miRNA: 3'- -ACGUCCCCGUCUUAUCGAGACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 72994 | 0.72 | 0.498947 |
Target: 5'- aGaCAGGGacaccGCAGAA-AGCUCcugGCGCCCc -3' miRNA: 3'- aC-GUCCC-----CGUCUUaUCGAGa--CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 85781 | 0.66 | 0.812943 |
Target: 5'- cGCGGGGGCuGuuaAGCUugaucaaCUGCaCCCu -3' miRNA: 3'- aCGUCCCCGuCuuaUCGA-------GACGcGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 86485 | 0.67 | 0.805037 |
Target: 5'- aGCAGuGGGUuca--GGCUCgcccuccaGCGCCCa -3' miRNA: 3'- aCGUC-CCCGucuuaUCGAGa-------CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 93011 | 0.7 | 0.60758 |
Target: 5'- aGCGGGGGCAGucaaggcAGUGGCUa-GUGgCCu -3' miRNA: 3'- aCGUCCCCGUC-------UUAUCGAgaCGCgGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 93091 | 0.67 | 0.787027 |
Target: 5'- gGCAGGGcCAGuucugagaAGUUCgGUGCCCg -3' miRNA: 3'- aCGUCCCcGUCuua-----UCGAGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 96276 | 0.66 | 0.831696 |
Target: 5'- aGCAGGuGGCGGcggAGCUUguggaaaucgccgaCGCCCg -3' miRNA: 3'- aCGUCC-CCGUCuuaUCGAGac------------GCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 100221 | 0.69 | 0.700148 |
Target: 5'- cGCGGGGcGCAGuu--GCUCggaacguccGCGCCg -3' miRNA: 3'- aCGUCCC-CGUCuuauCGAGa--------CGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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