miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 150442 0.69 0.689079
Target:  5'- cGCcucGGGGCGGGAgaucuuaUAGCUCgacgggacCGCCCu -3'
miRNA:   3'- aCGu--CCCCGUCUU-------AUCGAGac------GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 66260 0.69 0.690088
Target:  5'- cUGcCAGGGcCAGAucgcGCUCUGCGUCg -3'
miRNA:   3'- -AC-GUCCCcGUCUuau-CGAGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 110213 0.69 0.69814
Target:  5'- gGCAGGGGCGGcAcgGGCggagaaugucugCUGUGCaaCCu -3'
miRNA:   3'- aCGUCCCCGUC-UuaUCGa-----------GACGCG--GG- -5'
24462 5' -57.5 NC_005264.1 + 20523 0.69 0.700148
Target:  5'- aGcCAGGGGCAc----GCgUUGCGCCCg -3'
miRNA:   3'- aC-GUCCCCGUcuuauCGaGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 100221 0.69 0.700148
Target:  5'- cGCGGGGcGCAGuu--GCUCggaacguccGCGCCg -3'
miRNA:   3'- aCGUCCC-CGUCuuauCGAGa--------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 43510 0.68 0.720088
Target:  5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3'
miRNA:   3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 162537 0.68 0.720088
Target:  5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3'
miRNA:   3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 150800 0.68 0.729949
Target:  5'- gGCGuguGGGGCAGGAgcgcAGCgaCUGC-CCCu -3'
miRNA:   3'- aCGU---CCCCGUCUUa---UCGa-GACGcGGG- -5'
24462 5' -57.5 NC_005264.1 + 129495 0.68 0.729949
Target:  5'- uUGCGGcGGcGCAGggUuuGGCg--GCGCCg -3'
miRNA:   3'- -ACGUC-CC-CGUCuuA--UCGagaCGCGGg -5'
24462 5' -57.5 NC_005264.1 + 39487 0.68 0.749411
Target:  5'- cGcCAGGGGCA----GGC-CUGCGCUg -3'
miRNA:   3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 158514 0.68 0.749411
Target:  5'- cGcCAGGGGCA----GGC-CUGCGCUg -3'
miRNA:   3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 25166 0.68 0.749411
Target:  5'- gGCAGGGGguGGcggGGCaagaaagaaaUCUGagggcCGCCCu -3'
miRNA:   3'- aCGUCCCCguCUua-UCG----------AGAC-----GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 114676 0.68 0.753256
Target:  5'- aGCGGGGGUgcagccacgccgagcAGGAUugcgcGGuCUCgUGCGCCUc -3'
miRNA:   3'- aCGUCCCCG---------------UCUUA-----UC-GAG-ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 6542 0.68 0.758038
Target:  5'- gGCAGGgggcuucGGCAGGAgcGcCUCguccacggugaUGCGCCCc -3'
miRNA:   3'- aCGUCC-------CCGUCUUauC-GAG-----------ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 100372 0.68 0.758038
Target:  5'- -aCAuGGGGCAaugcugcGGAUGccGCUgCUGCGCCCc -3'
miRNA:   3'- acGU-CCCCGU-------CUUAU--CGA-GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 125569 0.68 0.758038
Target:  5'- gGCAGGgggcuucGGCAGGAgcGcCUCguccacggugaUGCGCCCc -3'
miRNA:   3'- aCGUCC-------CCGUCUUauC-GAG-----------ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 22294 0.68 0.758992
Target:  5'- aGCAGGGucgucgGUAGGAUAGCuguagUCUgGCGCgCg -3'
miRNA:   3'- aCGUCCC------CGUCUUAUCG-----AGA-CGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 27422 0.67 0.768461
Target:  5'- cGCucGGGGGCAuGAUgaGGCUuucagccagacCUGCGCCg -3'
miRNA:   3'- aCG--UCCCCGUcUUA--UCGA-----------GACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 6640 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 125667 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.