miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 34095 0.71 0.557971
Target:  5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3'
miRNA:   3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5'
24462 5' -57.5 NC_005264.1 + 36527 0.67 0.777809
Target:  5'- gGCGGGcGCAGGAgccaucGGCcgcGCGCCCg -3'
miRNA:   3'- aCGUCCcCGUCUUa-----UCGagaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 37090 0.66 0.847191
Target:  5'- cGCGGcGGCAGuuccgGGgaCgGCGCCCc -3'
miRNA:   3'- aCGUCcCCGUCuua--UCgaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 37953 0.67 0.787027
Target:  5'- aUGgGGGGGCGGu-UAGCcagUUGCGCg- -3'
miRNA:   3'- -ACgUCCCCGUCuuAUCGa--GACGCGgg -5'
24462 5' -57.5 NC_005264.1 + 39487 0.68 0.749411
Target:  5'- cGcCAGGGGCA----GGC-CUGCGCUg -3'
miRNA:   3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 43510 0.68 0.720088
Target:  5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3'
miRNA:   3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 43796 0.66 0.843986
Target:  5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3'
miRNA:   3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 58010 0.66 0.830862
Target:  5'- aGCGGccccGGCGGAcaGGCcgUCgugcgGCGCCCg -3'
miRNA:   3'- aCGUCc---CCGUCUuaUCG--AGa----CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 61813 0.69 0.67998
Target:  5'- cGCGGGcaucgccgGGCAGugccUGGCUCgccUGCGCCg -3'
miRNA:   3'- aCGUCC--------CCGUCuu--AUCGAG---ACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 62606 0.67 0.787027
Target:  5'- aGUAGcGGcGCGGAcguuccgAGCaaCUGCGCCCc -3'
miRNA:   3'- aCGUC-CC-CGUCUua-----UCGa-GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 66260 0.69 0.690088
Target:  5'- cUGcCAGGGcCAGAucgcGCUCUGCGUCg -3'
miRNA:   3'- -AC-GUCCCcGUCUuau-CGAGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 67351 0.74 0.390517
Target:  5'- cGCgaAGaGGGCGGAaaacGUAGCgcccgcgcucgCUGCGCCCg -3'
miRNA:   3'- aCG--UC-CCCGUCU----UAUCGa----------GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 67682 1.12 0.001128
Target:  5'- uUGCAGGGGCAGAAUAGCUCUGCGCCCg -3'
miRNA:   3'- -ACGUCCCCGUCUUAUCGAGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 72994 0.72 0.498947
Target:  5'- aGaCAGGGacaccGCAGAA-AGCUCcugGCGCCCc -3'
miRNA:   3'- aC-GUCCC-----CGUCUUaUCGAGa--CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 85781 0.66 0.812943
Target:  5'- cGCGGGGGCuGuuaAGCUugaucaaCUGCaCCCu -3'
miRNA:   3'- aCGUCCCCGuCuuaUCGA-------GACGcGGG- -5'
24462 5' -57.5 NC_005264.1 + 86485 0.67 0.805037
Target:  5'- aGCAGuGGGUuca--GGCUCgcccuccaGCGCCCa -3'
miRNA:   3'- aCGUC-CCCGucuuaUCGAGa-------CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 93011 0.7 0.60758
Target:  5'- aGCGGGGGCAGucaaggcAGUGGCUa-GUGgCCu -3'
miRNA:   3'- aCGUCCCCGUC-------UUAUCGAgaCGCgGG- -5'
24462 5' -57.5 NC_005264.1 + 93091 0.67 0.787027
Target:  5'- gGCAGGGcCAGuucugagaAGUUCgGUGCCCg -3'
miRNA:   3'- aCGUCCCcGUCuua-----UCGAGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 96276 0.66 0.831696
Target:  5'- aGCAGGuGGCGGcggAGCUUguggaaaucgccgaCGCCCg -3'
miRNA:   3'- aCGUCC-CCGUCuuaUCGAGac------------GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 100221 0.69 0.700148
Target:  5'- cGCGGGGcGCAGuu--GCUCggaacguccGCGCCg -3'
miRNA:   3'- aCGUCCC-CGUCuuauCGAGa--------CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.