miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 1018 0.66 0.858161
Target:  5'- gUGgGGGGGCAGGGgccGUUCUGUauucucgcgguucuuGCuCCa -3'
miRNA:   3'- -ACgUCCCCGUCUUau-CGAGACG---------------CG-GG- -5'
24462 5' -57.5 NC_005264.1 + 2634 0.67 0.772215
Target:  5'- gUGuCAGcGGGCAGGuUgcgcucugcagcggcAGCUCUGaCGUCCu -3'
miRNA:   3'- -AC-GUC-CCCGUCUuA---------------UCGAGAC-GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 3415 0.72 0.528153
Target:  5'- cGCGGGGGaGGGacGUAGggCcGCGCCCg -3'
miRNA:   3'- aCGUCCCCgUCU--UAUCgaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 4682 0.71 0.557971
Target:  5'- cUGCGucGGGGC-GAGUGGCgCcGCGUCCa -3'
miRNA:   3'- -ACGU--CCCCGuCUUAUCGaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 5995 0.66 0.855067
Target:  5'- aGCAGcGcGGCGGuc--GCUgUGCGCaCCu -3'
miRNA:   3'- aCGUC-C-CCGUCuuauCGAgACGCG-GG- -5'
24462 5' -57.5 NC_005264.1 + 6542 0.68 0.758038
Target:  5'- gGCAGGgggcuucGGCAGGAgcGcCUCguccacggugaUGCGCCCc -3'
miRNA:   3'- aCGUCC-------CCGUCUUauC-GAG-----------ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 6640 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 7864 0.67 0.787027
Target:  5'- uUGUGGGGGC-----GGCgUCgGCGCCCc -3'
miRNA:   3'- -ACGUCCCCGucuuaUCG-AGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 9676 0.71 0.547973
Target:  5'- gGCcuuGGGGgAGGcgGGCUC-GCGCCUc -3'
miRNA:   3'- aCGu--CCCCgUCUuaUCGAGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 12029 0.67 0.777809
Target:  5'- -uCAGGGGCAGucgcugcGCUCcUGC-CCCa -3'
miRNA:   3'- acGUCCCCGUCuuau---CGAG-ACGcGGG- -5'
24462 5' -57.5 NC_005264.1 + 16164 0.69 0.646393
Target:  5'- uUGCaAGGGGCGGcuaaguuacgcggaGGUAGCU-UGCGUCUa -3'
miRNA:   3'- -ACG-UCCCCGUC--------------UUAUCGAgACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 20136 0.67 0.777809
Target:  5'- aUGC--GGGCAGGcgAUGGCgcgcCgccgGCGCCCa -3'
miRNA:   3'- -ACGucCCCGUCU--UAUCGa---Ga---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 20523 0.69 0.700148
Target:  5'- aGcCAGGGGCAc----GCgUUGCGCCCg -3'
miRNA:   3'- aC-GUCCCCGUcuuauCGaGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 22294 0.68 0.758992
Target:  5'- aGCAGGGucgucgGUAGGAUAGCuguagUCUgGCGCgCg -3'
miRNA:   3'- aCGUCCC------CGUCUUAUCG-----AGA-CGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 25166 0.68 0.749411
Target:  5'- gGCAGGGGguGGcggGGCaagaaagaaaUCUGagggcCGCCCu -3'
miRNA:   3'- aCGUCCCCguCUua-UCG----------AGAC-----GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 27422 0.67 0.768461
Target:  5'- cGCucGGGGGCAuGAUgaGGCUuucagccagacCUGCGCCg -3'
miRNA:   3'- aCG--UCCCCGUcUUA--UCGA-----------GACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 31171 0.67 0.805922
Target:  5'- gUGaCGGGGGcCGGAGggcgAGCgagugggacggggggCUGCgGCCCu -3'
miRNA:   3'- -AC-GUCCCC-GUCUUa---UCGa--------------GACG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 31415 0.69 0.689079
Target:  5'- cGCcucGGGGCGGGAgaucuuaUAGCUCgacgggacCGCCCu -3'
miRNA:   3'- aCGu--CCCCGUCUU-------AUCGAGac------GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 31547 0.66 0.836662
Target:  5'- gGUGGGGGCGGAcggccauucccgacGUGGag--GCGCCa -3'
miRNA:   3'- aCGUCCCCGUCU--------------UAUCgagaCGCGGg -5'
24462 5' -57.5 NC_005264.1 + 31747 0.67 0.772215
Target:  5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3'
miRNA:   3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.