Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24462 | 5' | -57.5 | NC_005264.1 | + | 162822 | 0.66 | 0.843986 |
Target: 5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3' miRNA: 3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 162537 | 0.68 | 0.720088 |
Target: 5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3' miRNA: 3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 158514 | 0.68 | 0.749411 |
Target: 5'- cGcCAGGGGCA----GGC-CUGCGCUg -3' miRNA: 3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 155680 | 0.66 | 0.82157 |
Target: 5'- aGCGGGgugacucGGCAGGgcGUAGcCUCagGCuGCCCu -3' miRNA: 3'- aCGUCC-------CCGUCU--UAUC-GAGa-CG-CGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 153122 | 0.71 | 0.557971 |
Target: 5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3' miRNA: 3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 151304 | 0.66 | 0.83912 |
Target: 5'- --gGGGGGCAGcGUAcGUguuaucCUGCGCCa -3' miRNA: 3'- acgUCCCCGUCuUAU-CGa-----GACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150800 | 0.68 | 0.729949 |
Target: 5'- gGCGuguGGGGCAGGAgcgcAGCgaCUGC-CCCu -3' miRNA: 3'- aCGU---CCCCGUCUUa---UCGa-GACGcGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150773 | 0.67 | 0.772215 |
Target: 5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3' miRNA: 3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150574 | 0.66 | 0.836662 |
Target: 5'- gGUGGGGGCGGAcggccauucccgacGUGGag--GCGCCa -3' miRNA: 3'- aCGUCCCCGUCU--------------UAUCgagaCGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150442 | 0.69 | 0.689079 |
Target: 5'- cGCcucGGGGCGGGAgaucuuaUAGCUCgacgggacCGCCCu -3' miRNA: 3'- aCGu--CCCCGUCUU-------AUCGAGac------GCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150198 | 0.67 | 0.805922 |
Target: 5'- gUGaCGGGGGcCGGAGggcgAGCgagugggacggggggCUGCgGCCCu -3' miRNA: 3'- -AC-GUCCCC-GUCUUa---UCGa--------------GACG-CGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 148440 | 0.66 | 0.83912 |
Target: 5'- aUGCcuGGuGGuCAGAAcAGC-CgGCGCCCg -3' miRNA: 3'- -ACGu-CC-CC-GUCUUaUCGaGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 146948 | 0.66 | 0.855067 |
Target: 5'- cGCAGaGGCuGGAUGGCgCUGagGCCg -3' miRNA: 3'- aCGUCcCCGuCUUAUCGaGACg-CGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 144940 | 0.66 | 0.830862 |
Target: 5'- --gGGGGGCuGAucagcuGCUgUGCGCgCCg -3' miRNA: 3'- acgUCCCCGuCUuau---CGAgACGCG-GG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 140051 | 0.69 | 0.669833 |
Target: 5'- cUGaCAGGGGCGuGAGcAGUgucgCcGCGCCCc -3' miRNA: 3'- -AC-GUCCCCGU-CUUaUCGa---GaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 139289 | 0.66 | 0.847191 |
Target: 5'- gUGguGGGcGCAGAAUuuGGCcaaaaUGCGUUCu -3' miRNA: 3'- -ACguCCC-CGUCUUA--UCGag---ACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 129495 | 0.68 | 0.729949 |
Target: 5'- uUGCGGcGGcGCAGggUuuGGCg--GCGCCg -3' miRNA: 3'- -ACGUC-CC-CGUCuuA--UCGagaCGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 128703 | 0.71 | 0.547973 |
Target: 5'- gGCcuuGGGGgAGGcgGGCUC-GCGCCUc -3' miRNA: 3'- aCGu--CCCCgUCUuaUCGAGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 128683 | 0.67 | 0.805922 |
Target: 5'- cUGCAGGGcGCGGuaccacgacccgaAGC-CUacGCGCCCg -3' miRNA: 3'- -ACGUCCC-CGUCuua----------UCGaGA--CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 126890 | 0.67 | 0.787027 |
Target: 5'- uUGUGGGGGC-----GGCgUCgGCGCCCc -3' miRNA: 3'- -ACGUCCCCGucuuaUCG-AGaCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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