miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 67682 1.12 0.001128
Target:  5'- uUGCAGGGGCAGAAUAGCUCUGCGCCCg -3'
miRNA:   3'- -ACGUCCCCGUCUUAUCGAGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 123261 0.82 0.139253
Target:  5'- gGCGGGGGCAGcAUAcuCUCUGgGCCCg -3'
miRNA:   3'- aCGUCCCCGUCuUAUc-GAGACgCGGG- -5'
24462 5' -57.5 NC_005264.1 + 67351 0.74 0.390517
Target:  5'- cGCgaAGaGGGCGGAaaacGUAGCgcccgcgcucgCUGCGCCCg -3'
miRNA:   3'- aCG--UC-CCCGUCU----UAUCGa----------GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 126300 0.73 0.451971
Target:  5'- cGCuuucGGGcgcGCGGccGAUGGCUcCUGCGCCCg -3'
miRNA:   3'- aCGu---CCC---CGUC--UUAUCGA-GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 72994 0.72 0.498947
Target:  5'- aGaCAGGGacaccGCAGAA-AGCUCcugGCGCCCc -3'
miRNA:   3'- aC-GUCCC-----CGUCUUaUCGAGa--CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 122442 0.72 0.528153
Target:  5'- cGCGGGGGaGGGacGUAGggCcGCGCCCg -3'
miRNA:   3'- aCGUCCCCgUCU--UAUCgaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 3415 0.72 0.528153
Target:  5'- cGCGGGGGaGGGacGUAGggCcGCGCCCg -3'
miRNA:   3'- aCGUCCCCgUCU--UAUCgaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 9676 0.71 0.547973
Target:  5'- gGCcuuGGGGgAGGcgGGCUC-GCGCCUc -3'
miRNA:   3'- aCGu--CCCCgUCUuaUCGAGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 128703 0.71 0.547973
Target:  5'- gGCcuuGGGGgAGGcgGGCUC-GCGCCUc -3'
miRNA:   3'- aCGu--CCCCgUCUuaUCGAGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 4682 0.71 0.557971
Target:  5'- cUGCGucGGGGC-GAGUGGCgCcGCGUCCa -3'
miRNA:   3'- -ACGU--CCCCGuCUUAUCGaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 153122 0.71 0.557971
Target:  5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3'
miRNA:   3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5'
24462 5' -57.5 NC_005264.1 + 34095 0.71 0.557971
Target:  5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3'
miRNA:   3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5'
24462 5' -57.5 NC_005264.1 + 123709 0.71 0.557971
Target:  5'- cUGCGucGGGGC-GAGUGGCgCcGCGUCCa -3'
miRNA:   3'- -ACGU--CCCCGuCUUAUCGaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 93011 0.7 0.60758
Target:  5'- aGCGGGGGCAGucaaggcAGUGGCUa-GUGgCCu -3'
miRNA:   3'- aCGUCCCCGUC-------UUAUCGAgaCGCgGG- -5'
24462 5' -57.5 NC_005264.1 + 16164 0.69 0.646393
Target:  5'- uUGCaAGGGGCGGcuaaguuacgcggaGGUAGCU-UGCGUCUa -3'
miRNA:   3'- -ACG-UCCCCGUC--------------UUAUCGAgACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 102767 0.69 0.669833
Target:  5'- gGCuAGGGGCGGGccaguucgGUGGC-CUGUguugcgcgauGCCCg -3'
miRNA:   3'- aCG-UCCCCGUCU--------UAUCGaGACG----------CGGG- -5'
24462 5' -57.5 NC_005264.1 + 140051 0.69 0.669833
Target:  5'- cUGaCAGGGGCGuGAGcAGUgucgCcGCGCCCc -3'
miRNA:   3'- -AC-GUCCCCGU-CUUaUCGa---GaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 61813 0.69 0.67998
Target:  5'- cGCGGGcaucgccgGGCAGugccUGGCUCgccUGCGCCg -3'
miRNA:   3'- aCGUCC--------CCGUCuu--AUCGAG---ACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 121638 0.69 0.67998
Target:  5'- --gGGGGGUcggAGAAgauagacGGCUCUGUGCCa -3'
miRNA:   3'- acgUCCCCG---UCUUa------UCGAGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 31415 0.69 0.689079
Target:  5'- cGCcucGGGGCGGGAgaucuuaUAGCUCgacgggacCGCCCu -3'
miRNA:   3'- aCGu--CCCCGUCUU-------AUCGAGac------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.