Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24462 | 5' | -57.5 | NC_005264.1 | + | 12029 | 0.67 | 0.777809 |
Target: 5'- -uCAGGGGCAGucgcugcGCUCcUGC-CCCa -3' miRNA: 3'- acGUCCCCGUCuuau---CGAG-ACGcGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 25166 | 0.68 | 0.749411 |
Target: 5'- gGCAGGGGguGGcggGGCaagaaagaaaUCUGagggcCGCCCu -3' miRNA: 3'- aCGUCCCCguCUua-UCG----------AGAC-----GCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 158514 | 0.68 | 0.749411 |
Target: 5'- cGcCAGGGGCA----GGC-CUGCGCUg -3' miRNA: 3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 125569 | 0.68 | 0.758038 |
Target: 5'- gGCAGGgggcuucGGCAGGAgcGcCUCguccacggugaUGCGCCCc -3' miRNA: 3'- aCGUCC-------CCGUCUUauC-GAG-----------ACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 100372 | 0.68 | 0.758038 |
Target: 5'- -aCAuGGGGCAaugcugcGGAUGccGCUgCUGCGCCCc -3' miRNA: 3'- acGU-CCCCGU-------CUUAU--CGA-GACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 27422 | 0.67 | 0.768461 |
Target: 5'- cGCucGGGGGCAuGAUgaGGCUuucagccagacCUGCGCCg -3' miRNA: 3'- aCG--UCCCCGUcUUA--UCGA-----------GACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 125667 | 0.67 | 0.771278 |
Target: 5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3' miRNA: 3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 2634 | 0.67 | 0.772215 |
Target: 5'- gUGuCAGcGGGCAGGuUgcgcucugcagcggcAGCUCUGaCGUCCu -3' miRNA: 3'- -AC-GUC-CCCGUCUuA---------------UCGAGAC-GCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150773 | 0.67 | 0.772215 |
Target: 5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3' miRNA: 3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 162537 | 0.68 | 0.720088 |
Target: 5'- gGUGGGaGGUGGGAgaccgaggaagGGCUCggGUGCCCa -3' miRNA: 3'- aCGUCC-CCGUCUUa----------UCGAGa-CGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 20523 | 0.69 | 0.700148 |
Target: 5'- aGcCAGGGGCAc----GCgUUGCGCCCg -3' miRNA: 3'- aC-GUCCCCGUcuuauCGaGACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 66260 | 0.69 | 0.690088 |
Target: 5'- cUGcCAGGGcCAGAucgcGCUCUGCGUCg -3' miRNA: 3'- -AC-GUCCCcGUCUuau-CGAGACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 122442 | 0.72 | 0.528153 |
Target: 5'- cGCGGGGGaGGGacGUAGggCcGCGCCCg -3' miRNA: 3'- aCGUCCCCgUCU--UAUCgaGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 128703 | 0.71 | 0.547973 |
Target: 5'- gGCcuuGGGGgAGGcgGGCUC-GCGCCUc -3' miRNA: 3'- aCGu--CCCCgUCUuaUCGAGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 153122 | 0.71 | 0.557971 |
Target: 5'- cGCGGcGGGCAcAAUGGCUCagcgGCGCg- -3' miRNA: 3'- aCGUC-CCCGUcUUAUCGAGa---CGCGgg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 123709 | 0.71 | 0.557971 |
Target: 5'- cUGCGucGGGGC-GAGUGGCgCcGCGUCCa -3' miRNA: 3'- -ACGU--CCCCGuCUUAUCGaGaCGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 93011 | 0.7 | 0.60758 |
Target: 5'- aGCGGGGGCAGucaaggcAGUGGCUa-GUGgCCu -3' miRNA: 3'- aCGUCCCCGUC-------UUAUCGAgaCGCgGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 16164 | 0.69 | 0.646393 |
Target: 5'- uUGCaAGGGGCGGcuaaguuacgcggaGGUAGCU-UGCGUCUa -3' miRNA: 3'- -ACG-UCCCCGUC--------------UUAUCGAgACGCGGG- -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 61813 | 0.69 | 0.67998 |
Target: 5'- cGCGGGcaucgccgGGCAGugccUGGCUCgccUGCGCCg -3' miRNA: 3'- aCGUCC--------CCGUCuu--AUCGAG---ACGCGGg -5' |
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24462 | 5' | -57.5 | NC_005264.1 | + | 150442 | 0.69 | 0.689079 |
Target: 5'- cGCcucGGGGCGGGAgaucuuaUAGCUCgacgggacCGCCCu -3' miRNA: 3'- aCGu--CCCCGUCUU-------AUCGAGac------GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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