miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 146948 0.66 0.855067
Target:  5'- cGCAGaGGCuGGAUGGCgCUGagGCCg -3'
miRNA:   3'- aCGUCcCCGuCUUAUCGaGACg-CGGg -5'
24462 5' -57.5 NC_005264.1 + 6542 0.68 0.758038
Target:  5'- gGCAGGgggcuucGGCAGGAgcGcCUCguccacggugaUGCGCCCc -3'
miRNA:   3'- aCGUCC-------CCGUCUUauC-GAG-----------ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 39487 0.68 0.749411
Target:  5'- cGcCAGGGGCA----GGC-CUGCGCUg -3'
miRNA:   3'- aC-GUCCCCGUcuuaUCGaGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 67682 1.12 0.001128
Target:  5'- uUGCAGGGGCAGAAUAGCUCUGCGCCCg -3'
miRNA:   3'- -ACGUCCCCGUCUUAUCGAGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 151304 0.66 0.83912
Target:  5'- --gGGGGGCAGcGUAcGUguuaucCUGCGCCa -3'
miRNA:   3'- acgUCCCCGUCuUAU-CGa-----GACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 31547 0.66 0.836662
Target:  5'- gGUGGGGGCGGAcggccauucccgacGUGGag--GCGCCa -3'
miRNA:   3'- aCGUCCCCGUCU--------------UAUCgagaCGCGGg -5'
24462 5' -57.5 NC_005264.1 + 155680 0.66 0.82157
Target:  5'- aGCGGGgugacucGGCAGGgcGUAGcCUCagGCuGCCCu -3'
miRNA:   3'- aCGUCC-------CCGUCU--UAUC-GAGa-CG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 128683 0.67 0.805922
Target:  5'- cUGCAGGGcGCGGuaccacgacccgaAGC-CUacGCGCCCg -3'
miRNA:   3'- -ACGUCCC-CGUCuua----------UCGaGA--CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 7864 0.67 0.787027
Target:  5'- uUGUGGGGGC-----GGCgUCgGCGCCCc -3'
miRNA:   3'- -ACGUCCCCGucuuaUCG-AGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 22294 0.68 0.758992
Target:  5'- aGCAGGGucgucgGUAGGAUAGCuguagUCUgGCGCgCg -3'
miRNA:   3'- aCGUCCC------CGUCUUAUCG-----AGA-CGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 20136 0.67 0.777809
Target:  5'- aUGC--GGGCAGGcgAUGGCgcgcCgccgGCGCCCa -3'
miRNA:   3'- -ACGucCCCGUCU--UAUCGa---Ga---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 115600 0.67 0.787027
Target:  5'- aGU-GGGGCcu----GCUCUGCGCCa -3'
miRNA:   3'- aCGuCCCCGucuuauCGAGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 139289 0.66 0.847191
Target:  5'- gUGguGGGcGCAGAAUuuGGCcaaaaUGCGUUCu -3'
miRNA:   3'- -ACguCCC-CGUCUUA--UCGag---ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 31747 0.67 0.772215
Target:  5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3'
miRNA:   3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 43796 0.66 0.843986
Target:  5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3'
miRNA:   3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 31171 0.67 0.805922
Target:  5'- gUGaCGGGGGcCGGAGggcgAGCgagugggacggggggCUGCgGCCCu -3'
miRNA:   3'- -AC-GUCCCC-GUCUUa---UCGa--------------GACG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 6640 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 114676 0.68 0.753256
Target:  5'- aGCGGGGGUgcagccacgccgagcAGGAUugcgcGGuCUCgUGCGCCUc -3'
miRNA:   3'- aCGUCCCCG---------------UCUUA-----UC-GAG-ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 148440 0.66 0.83912
Target:  5'- aUGCcuGGuGGuCAGAAcAGC-CgGCGCCCg -3'
miRNA:   3'- -ACGu-CC-CC-GUCUUaUCGaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 96276 0.66 0.831696
Target:  5'- aGCAGGuGGCGGcggAGCUUguggaaaucgccgaCGCCCg -3'
miRNA:   3'- aCGUCC-CCGUCuuaUCGAGac------------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.