miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 31171 0.67 0.805922
Target:  5'- gUGaCGGGGGcCGGAGggcgAGCgagugggacggggggCUGCgGCCCu -3'
miRNA:   3'- -AC-GUCCCC-GUCUUa---UCGa--------------GACG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 128683 0.67 0.805922
Target:  5'- cUGCAGGGcGCGGuaccacgacccgaAGC-CUacGCGCCCg -3'
miRNA:   3'- -ACGUCCC-CGUCuua----------UCGaGA--CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 150198 0.67 0.805922
Target:  5'- gUGaCGGGGGcCGGAGggcgAGCgagugggacggggggCUGCgGCCCu -3'
miRNA:   3'- -AC-GUCCCC-GUCUUa---UCGa--------------GACG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 116740 0.67 0.805037
Target:  5'- cUGCAGaGGUAGuAUGGaUUCacGCGCCCg -3'
miRNA:   3'- -ACGUCcCCGUCuUAUC-GAGa-CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 86485 0.67 0.805037
Target:  5'- aGCAGuGGGUuca--GGCUCgcccuccaGCGCCCa -3'
miRNA:   3'- aCGUC-CCCGucuuaUCGAGa-------CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 37953 0.67 0.787027
Target:  5'- aUGgGGGGGCGGu-UAGCcagUUGCGCg- -3'
miRNA:   3'- -ACgUCCCCGUCuuAUCGa--GACGCGgg -5'
24462 5' -57.5 NC_005264.1 + 115600 0.67 0.787027
Target:  5'- aGU-GGGGCcu----GCUCUGCGCCa -3'
miRNA:   3'- aCGuCCCCGucuuauCGAGACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 93091 0.67 0.787027
Target:  5'- gGCAGGGcCAGuucugagaAGUUCgGUGCCCg -3'
miRNA:   3'- aCGUCCCcGUCuua-----UCGAGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 7864 0.67 0.787027
Target:  5'- uUGUGGGGGC-----GGCgUCgGCGCCCc -3'
miRNA:   3'- -ACGUCCCCGucuuaUCG-AGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 126890 0.67 0.787027
Target:  5'- uUGUGGGGGC-----GGCgUCgGCGCCCc -3'
miRNA:   3'- -ACGUCCCCGucuuaUCG-AGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 62606 0.67 0.787027
Target:  5'- aGUAGcGGcGCGGAcguuccgAGCaaCUGCGCCCc -3'
miRNA:   3'- aCGUC-CC-CGUCUua-----UCGa-GACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 20136 0.67 0.777809
Target:  5'- aUGC--GGGCAGGcgAUGGCgcgcCgccgGCGCCCa -3'
miRNA:   3'- -ACGucCCCGUCU--UAUCGa---Ga---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 12029 0.67 0.777809
Target:  5'- -uCAGGGGCAGucgcugcGCUCcUGC-CCCa -3'
miRNA:   3'- acGUCCCCGUCuuau---CGAG-ACGcGGG- -5'
24462 5' -57.5 NC_005264.1 + 36527 0.67 0.777809
Target:  5'- gGCGGGcGCAGGAgccaucGGCcgcGCGCCCg -3'
miRNA:   3'- aCGUCCcCGUCUUa-----UCGagaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 2634 0.67 0.772215
Target:  5'- gUGuCAGcGGGCAGGuUgcgcucugcagcggcAGCUCUGaCGUCCu -3'
miRNA:   3'- -AC-GUC-CCCGUCUuA---------------UCGAGAC-GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 150773 0.67 0.772215
Target:  5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3'
miRNA:   3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 31747 0.67 0.772215
Target:  5'- aGCAGGGGCGccuuuggcucgcaccGgGAUGGUUCgcggGCGCUUc -3'
miRNA:   3'- aCGUCCCCGU---------------C-UUAUCGAGa---CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 125667 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 6640 0.67 0.771278
Target:  5'- cGCGGGGGCAcauguccGGA-AGCUCcggcagagauccugGCGCCa -3'
miRNA:   3'- aCGUCCCCGU-------CUUaUCGAGa-------------CGCGGg -5'
24462 5' -57.5 NC_005264.1 + 27422 0.67 0.768461
Target:  5'- cGCucGGGGGCAuGAUgaGGCUuucagccagacCUGCGCCg -3'
miRNA:   3'- aCG--UCCCCGUcUUA--UCGA-----------GACGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.