miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 3' -54.1 NC_005264.1 + 16398 0.66 0.970638
Target:  5'- uCGCaugUGCGcaaGUCAGAgCCGCGGCa -3'
miRNA:   3'- cGCG---AUGCagaUAGUCUaGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 102714 0.68 0.925576
Target:  5'- uUGCUACGcCacggUGUCGGAaaaagUCGCGGCGu -3'
miRNA:   3'- cGCGAUGCaG----AUAGUCUa----GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 116909 0.69 0.895714
Target:  5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3'
miRNA:   3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 65392 1.12 0.003455
Target:  5'- gGCGCUACGUCUAUCAGAUCCGCGGCGg -3'
miRNA:   3'- -CGCGAUGCAGAUAGUCUAGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 99187 0.66 0.96446
Target:  5'- gGCGUagACGUggggucCUcgCAGGccUCCGCGGCc -3'
miRNA:   3'- -CGCGa-UGCA------GAuaGUCU--AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 129588 0.67 0.953575
Target:  5'- cGCGCUcugcagGCG-CUG-CGGcgCgGCGGCGa -3'
miRNA:   3'- -CGCGA------UGCaGAUaGUCuaGgCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 128536 0.67 0.949495
Target:  5'- gGCGCUAUaGUUccUguGAcccacguauauuUCCGCGGCGg -3'
miRNA:   3'- -CGCGAUG-CAGauAguCU------------AGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 162802 0.67 0.949495
Target:  5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3'
miRNA:   3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 77285 0.67 0.940638
Target:  5'- cGCGCUcgaacgaauccaACGUCagcuUCAGGUCgCG-GGCGa -3'
miRNA:   3'- -CGCGA------------UGCAGau--AGUCUAG-GCgCCGC- -5'
24466 3' -54.1 NC_005264.1 + 133240 0.68 0.925576
Target:  5'- cGCGCUACG-CUucgAUCuGGAgCCGCaGGCa -3'
miRNA:   3'- -CGCGAUGCaGA---UAG-UCUaGGCG-CCGc -5'
24466 3' -54.1 NC_005264.1 + 50290 0.67 0.940638
Target:  5'- uGCGUaGCGgCUAaCAGGUCgGCGGUu -3'
miRNA:   3'- -CGCGaUGCaGAUaGUCUAGgCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 100039 0.67 0.945184
Target:  5'- cGCuGCUGCGUCcgguggaaaaaUAUCAgGGUuuGCGGgGc -3'
miRNA:   3'- -CG-CGAUGCAG-----------AUAGU-CUAggCGCCgC- -5'
24466 3' -54.1 NC_005264.1 + 75096 0.66 0.970638
Target:  5'- uGCGCUAC-UUgacgCAGucgcgCUGCGGCGa -3'
miRNA:   3'- -CGCGAUGcAGaua-GUCua---GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 130273 0.68 0.930835
Target:  5'- uGCGCgACGUUgcggCGGcuaCCGCGGCa -3'
miRNA:   3'- -CGCGaUGCAGaua-GUCua-GGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 57847 0.66 0.970348
Target:  5'- uGCGCUGCaaacgGUC-GUCAGcgCCagagacgGCGGCa -3'
miRNA:   3'- -CGCGAUG-----CAGaUAGUCuaGG-------CGCCGc -5'
24466 3' -54.1 NC_005264.1 + 70727 0.67 0.949495
Target:  5'- aCGCUGCG-CUGUguGccgCCGCaGCGa -3'
miRNA:   3'- cGCGAUGCaGAUAguCua-GGCGcCGC- -5'
24466 3' -54.1 NC_005264.1 + 37581 0.68 0.930835
Target:  5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3'
miRNA:   3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 38251 0.68 0.925576
Target:  5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3'
miRNA:   3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 29149 0.66 0.96446
Target:  5'- uGCGCgGCGgcaa--GGA-CCGCGGCGa -3'
miRNA:   3'- -CGCGaUGCagauagUCUaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 156396 0.67 0.953575
Target:  5'- aGCGCgacgaaggAUGUCUAggguUCAGugcCUGCGGCu -3'
miRNA:   3'- -CGCGa-------UGCAGAU----AGUCua-GGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.