miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24469 3' -51.8 NC_005264.1 + 112588 0.66 0.993469
Target:  5'- aUCGCCGCCG-CGgcagGUGCACaaACUGg- -3'
miRNA:   3'- -AGUGGUGGCaGCa---CAUGUGc-UGAUga -5'
24469 3' -51.8 NC_005264.1 + 144841 0.66 0.993469
Target:  5'- cCGCCGCCGUCagagccgGUGC-CGGCUuugaACg -3'
miRNA:   3'- aGUGGUGGCAGca-----CAUGuGCUGA----UGa -5'
24469 3' -51.8 NC_005264.1 + 69612 0.66 0.993469
Target:  5'- gUAUUACaCGaUCGUG-GCGCGACUGCc -3'
miRNA:   3'- aGUGGUG-GC-AGCACaUGUGCUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 54548 0.66 0.992486
Target:  5'- uUCGCCGCCGacUCG-GUcaGCGCGAUU-CUc -3'
miRNA:   3'- -AGUGGUGGC--AGCaCA--UGUGCUGAuGA- -5'
24469 3' -51.8 NC_005264.1 + 87734 0.66 0.992486
Target:  5'- uUCAUCGCCG-Ca---GCGCGACUGCg -3'
miRNA:   3'- -AGUGGUGGCaGcacaUGUGCUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 21511 0.66 0.991272
Target:  5'- gCACCGCCGUCGcagugggcgcaggUGUAguUGAC-GCUu -3'
miRNA:   3'- aGUGGUGGCAGC-------------ACAUguGCUGaUGA- -5'
24469 3' -51.8 NC_005264.1 + 57405 0.66 0.990168
Target:  5'- -gACCACCGUCGU-UAUGCcauACUGCg -3'
miRNA:   3'- agUGGUGGCAGCAcAUGUGc--UGAUGa -5'
24469 3' -51.8 NC_005264.1 + 37748 0.66 0.990168
Target:  5'- cCGCCACCGUCG---ACGCGAgUucguCUa -3'
miRNA:   3'- aGUGGUGGCAGCacaUGUGCUgAu---GA- -5'
24469 3' -51.8 NC_005264.1 + 33467 0.66 0.988385
Target:  5'- cCGCCAcggucuuuuccCCGcgcacUCGUGUauuggcuauucguuGCGCGGCUACUa -3'
miRNA:   3'- aGUGGU-----------GGC-----AGCACA--------------UGUGCUGAUGA- -5'
24469 3' -51.8 NC_005264.1 + 137224 0.66 0.987325
Target:  5'- cCACCGCCGcCGUGUuccgcaACGcCGGCccgGCg -3'
miRNA:   3'- aGUGGUGGCaGCACA------UGU-GCUGa--UGa -5'
24469 3' -51.8 NC_005264.1 + 25961 0.66 0.987325
Target:  5'- aCGgCGCgGaCGUGUGCACGAUUGg- -3'
miRNA:   3'- aGUgGUGgCaGCACAUGUGCUGAUga -5'
24469 3' -51.8 NC_005264.1 + 69420 0.66 0.987325
Target:  5'- -uGCCGCCGUCGgaGUAUguaACGAUUAa- -3'
miRNA:   3'- agUGGUGGCAGCa-CAUG---UGCUGAUga -5'
24469 3' -51.8 NC_005264.1 + 126888 0.66 0.987168
Target:  5'- aUCGCCAUCGUCG---GCGCGaaacaggucucgcGCUACa -3'
miRNA:   3'- -AGUGGUGGCAGCacaUGUGC-------------UGAUGa -5'
24469 3' -51.8 NC_005264.1 + 34760 0.67 0.985685
Target:  5'- gUCGCCGCUGUCGc-UACACGAa---- -3'
miRNA:   3'- -AGUGGUGGCAGCacAUGUGCUgauga -5'
24469 3' -51.8 NC_005264.1 + 156319 0.67 0.985685
Target:  5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3'
miRNA:   3'- agUGGUGGCa---GCACAUG-UGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 37292 0.67 0.985685
Target:  5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3'
miRNA:   3'- agUGGUGGCa---GCACAUG-UGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 80137 0.67 0.985685
Target:  5'- -gGCCGCUGUCGUG-GCugGGuCUAg- -3'
miRNA:   3'- agUGGUGGCAGCACaUGugCU-GAUga -5'
24469 3' -51.8 NC_005264.1 + 149533 0.67 0.983886
Target:  5'- gCGUCGCCGUCGUaaccaggaggGUACAUGACU-CUc -3'
miRNA:   3'- aGUGGUGGCAGCA----------CAUGUGCUGAuGA- -5'
24469 3' -51.8 NC_005264.1 + 84243 0.67 0.983886
Target:  5'- cUUGCCuACCG-CGUGgACACGcGCUGCg -3'
miRNA:   3'- -AGUGG-UGGCaGCACaUGUGC-UGAUGa -5'
24469 3' -51.8 NC_005264.1 + 36076 0.67 0.981922
Target:  5'- -uGCUGCCGUCGcUGUcccucucuucgGCGCGGCUGg- -3'
miRNA:   3'- agUGGUGGCAGC-ACA-----------UGUGCUGAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.