miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 3' -53.6 NC_005264.1 + 150550 0.66 0.974363
Target:  5'- gGCUcgggcGGGGAGGGccgUUggGGUgGggGCGGACGg -3'
miRNA:   3'- -UGA-----UCUCUCCU---AG--UCG-CuuCGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 31523 0.66 0.974363
Target:  5'- gGCUcgggcGGGGAGGGccgUUggGGUgGggGCGGACGg -3'
miRNA:   3'- -UGA-----UCUCUCCU---AG--UCG-CuuCGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 56929 0.66 0.974363
Target:  5'- gGCgUAGAGGGGGcaAGCGGAGacgcaGGAUa -3'
miRNA:   3'- -UG-AUCUCUCCUagUCGCUUCg----CCUGc -5'
24475 3' -53.6 NC_005264.1 + 6782 0.66 0.971618
Target:  5'- aGCcAGGGAuGGGUgCGGCGGcucagAGgGGACGg -3'
miRNA:   3'- -UGaUCUCU-CCUA-GUCGCU-----UCgCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 125808 0.66 0.971618
Target:  5'- aGCcAGGGAuGGGUgCGGCGGcucagAGgGGACGg -3'
miRNA:   3'- -UGaUCUCU-CCUA-GUCGCU-----UCgCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 9668 0.66 0.968667
Target:  5'- uCUAGcGAGGccuUgGGgGAGGCGGGCu -3'
miRNA:   3'- uGAUCuCUCCu--AgUCgCUUCGCCUGc -5'
24475 3' -53.6 NC_005264.1 + 128695 0.66 0.968667
Target:  5'- uCUAGcGAGGccuUgGGgGAGGCGGGCu -3'
miRNA:   3'- uGAUCuCUCCu--AgUCgCUUCGCCUGc -5'
24475 3' -53.6 NC_005264.1 + 95462 0.66 0.962124
Target:  5'- cGCgccGGcGGGcgCAGCGAGcGCGGGCGc -3'
miRNA:   3'- -UGau-CUcUCCuaGUCGCUU-CGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 13272 0.66 0.95852
Target:  5'- ---cGAcGAGGGUucgcgcCAGCGAGGCGGGuCGu -3'
miRNA:   3'- ugauCU-CUCCUA------GUCGCUUCGCCU-GC- -5'
24475 3' -53.6 NC_005264.1 + 132299 0.66 0.95852
Target:  5'- ---cGAcGAGGGUucgcgcCAGCGAGGCGGGuCGu -3'
miRNA:   3'- ugauCU-CUCCUA------GUCGCUUCGCCU-GC- -5'
24475 3' -53.6 NC_005264.1 + 34483 0.67 0.954687
Target:  5'- cGCUucaGGAGGAcguUCGGCGGgaauGGgGGGCGg -3'
miRNA:   3'- -UGAuc-UCUCCU---AGUCGCU----UCgCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 51832 0.67 0.941779
Target:  5'- --aGGAGAgGGGUgGGCGcuccGCGGGCGu -3'
miRNA:   3'- ugaUCUCU-CCUAgUCGCuu--CGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 43973 0.67 0.941779
Target:  5'- aACgguGAuGAGGAcgCAgaacGCGAGGCGGACu -3'
miRNA:   3'- -UGau-CU-CUCCUa-GU----CGCUUCGCCUGc -5'
24475 3' -53.6 NC_005264.1 + 3691 0.68 0.92452
Target:  5'- gGCgAGAcGAGGAggaCGGCGAucgaucgugggauGCGGACGa -3'
miRNA:   3'- -UGaUCU-CUCCUa--GUCGCUu------------CGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 36805 0.68 0.92118
Target:  5'- uACUGGAGAGGAgc--CGccGCGGGCc -3'
miRNA:   3'- -UGAUCUCUCCUagucGCuuCGCCUGc -5'
24475 3' -53.6 NC_005264.1 + 80345 0.68 0.92118
Target:  5'- cGCgcGGGucGGGUCGGUugGAGGCGGugGu -3'
miRNA:   3'- -UGauCUCu-CCUAGUCG--CUUCGCCugC- -5'
24475 3' -53.6 NC_005264.1 + 155831 0.68 0.92118
Target:  5'- uACUGGAGAGGAgc--CGccGCGGGCc -3'
miRNA:   3'- -UGAUCUCUCCUagucGCuuCGCCUGc -5'
24475 3' -53.6 NC_005264.1 + 120043 0.68 0.908801
Target:  5'- aGCUc-AGGGGGUCuAGCGGgggggaaguagguGGCGGACGc -3'
miRNA:   3'- -UGAucUCUCCUAG-UCGCU-------------UCGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 21934 0.69 0.903168
Target:  5'- -gUGGAGcuGGUCGGCGAcuCGGGCGc -3'
miRNA:   3'- ugAUCUCucCUAGUCGCUucGCCUGC- -5'
24475 3' -53.6 NC_005264.1 + 104040 0.69 0.883007
Target:  5'- -aUGGAGAGGuuuuucggccUCAGgGggGCGGuCGa -3'
miRNA:   3'- ugAUCUCUCCu---------AGUCgCuuCGCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.