miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 54394 1.1 0.002249
Target:  5'- aUGCGGCAACUCCGCUAAUCUCCCCACg -3'
miRNA:   3'- -ACGCCGUUGAGGCGAUUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 60370 0.76 0.378126
Target:  5'- aGCccuaaacGCAGCUCCaCUAGUUUCCCCACg -3'
miRNA:   3'- aCGc------CGUUGAGGcGAUUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 133393 0.73 0.564783
Target:  5'- cGCGGCGGCgcagcCCGUUGGUggCCCCAa -3'
miRNA:   3'- aCGCCGUUGa----GGCGAUUAgaGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 154542 0.72 0.615963
Target:  5'- gUGcCGGCGAUggcaCGCgGAUCUCCCCGg -3'
miRNA:   3'- -AC-GCCGUUGag--GCGaUUAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 25630 0.71 0.636572
Target:  5'- gGCGGCGguggggccgcGCUCCGCgu-UUUCCUCAa -3'
miRNA:   3'- aCGCCGU----------UGAGGCGauuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 102820 0.71 0.636572
Target:  5'- aUGCGGCGcCUCCGuCUAGUCgauUCCAUg -3'
miRNA:   3'- -ACGCCGUuGAGGC-GAUUAGag-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 2660 0.71 0.636572
Target:  5'- aGCGGCAGCUCUGacgucCUAGUCgggUCCGCa -3'
miRNA:   3'- aCGCCGUUGAGGC-----GAUUAGag-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 31897 0.71 0.657168
Target:  5'- aGCGGCGACcgugggaaaaUCUGCgggcAUUUUCCCACg -3'
miRNA:   3'- aCGCCGUUG----------AGGCGau--UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 150923 0.71 0.657168
Target:  5'- aGCGGCGACcgugggaaaaUCUGCgggcAUUUUCCCACg -3'
miRNA:   3'- aCGCCGUUG----------AGGCGau--UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 122046 0.71 0.667439
Target:  5'- cGCGGCAagcgGCUCCGCUc-UCggCgCCGCg -3'
miRNA:   3'- aCGCCGU----UGAGGCGAuuAGa-GgGGUG- -5'
24475 5' -55.8 NC_005264.1 + 59292 0.7 0.705121
Target:  5'- cUGCGGCGucuGCcguuccgccgcauaUCCGCUcgAGUCUCUCUGCg -3'
miRNA:   3'- -ACGCCGU---UG--------------AGGCGA--UUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 123244 0.7 0.705121
Target:  5'- aGCGcGCAGCUCCGuCUGGcgggggcagcauacUCUCugggCCCGCg -3'
miRNA:   3'- aCGC-CGUUGAGGC-GAUU--------------AGAG----GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 40902 0.7 0.707138
Target:  5'- -uCGGCGACUCCGUcgcuucgccgucgccCUCCCCGCc -3'
miRNA:   3'- acGCCGUUGAGGCGauua-----------GAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 160425 0.7 0.708145
Target:  5'- cGCGGC--CUCCGCUu-UCUUCCUAg -3'
miRNA:   3'- aCGCCGuuGAGGCGAuuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 41398 0.7 0.708145
Target:  5'- cGCGGC--CUCCGCUu-UCUUCCUAg -3'
miRNA:   3'- aCGCCGuuGAGGCGAuuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 159139 0.7 0.715178
Target:  5'- cGCGGCAAguacugugcgcccuUUCCGCgccaggCCCCGCa -3'
miRNA:   3'- aCGCCGUU--------------GAGGCGauuagaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 67484 0.7 0.718181
Target:  5'- gGCGGCAcGCgCCGCccGUCggCCCCAUu -3'
miRNA:   3'- aCGCCGU-UGaGGCGauUAGa-GGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 109319 0.7 0.718181
Target:  5'- cGCGGCGcuaguuagcGCUCCGaugcGUCUCCUCGa -3'
miRNA:   3'- aCGCCGU---------UGAGGCgau-UAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 79657 0.7 0.718181
Target:  5'- cGCGccGCGcCUgCCGCUGAcaaauUCUCCCCAUc -3'
miRNA:   3'- aCGC--CGUuGA-GGCGAUU-----AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 38351 0.7 0.728143
Target:  5'- gGCGGaGGCUgCCGCUuuuUCUCgCCGCu -3'
miRNA:   3'- aCGCCgUUGA-GGCGAuu-AGAGgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.