miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 67528 0.68 0.830117
Target:  5'- gGCGGCAAuCUCCaugcGCUGccguauggcggcGUCUCUCuCACu -3'
miRNA:   3'- aCGCCGUU-GAGG----CGAU------------UAGAGGG-GUG- -5'
24475 5' -55.8 NC_005264.1 + 10126 0.68 0.794992
Target:  5'- --aGGCAACUCCcacuGCcgaggauagUAGUCUCCaCCGCg -3'
miRNA:   3'- acgCCGUUGAGG----CG---------AUUAGAGG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 126916 0.68 0.794992
Target:  5'- aUGCGGCG---UCGgaGGUCUCCUCGCc -3'
miRNA:   3'- -ACGCCGUugaGGCgaUUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 159928 0.68 0.812008
Target:  5'- -uCGGCGACUCCGuCgcucucgccgucgccCUCCCCGCc -3'
miRNA:   3'- acGCCGUUGAGGC-Gauua-----------GAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 133594 0.68 0.812888
Target:  5'- cGCGccGCAGuCUCCGCUGugCUCCUCGa -3'
miRNA:   3'- aCGC--CGUU-GAGGCGAUuaGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 117515 0.68 0.812888
Target:  5'- cGCGGCGcgUCUGCggucgCUCCCCu- -3'
miRNA:   3'- aCGCCGUugAGGCGauua-GAGGGGug -5'
24475 5' -55.8 NC_005264.1 + 121506 0.68 0.812888
Target:  5'- cGCGGCuGCUUCGacgaUGGUCggcgggCCUCGCg -3'
miRNA:   3'- aCGCCGuUGAGGCg---AUUAGa-----GGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 4364 0.68 0.82159
Target:  5'- gGCGGCAGCUCUcucuccugaGCgaAAUC-CCCCGu -3'
miRNA:   3'- aCGCCGUUGAGG---------CGa-UUAGaGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 132407 0.68 0.82245
Target:  5'- cGCGGCucccccgagaccucCUCCGCcgcagCUCUCCGCa -3'
miRNA:   3'- aCGCCGuu------------GAGGCGauua-GAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 34265 0.69 0.767054
Target:  5'- cGCGGUAA-UCCGCgugcugcgCUCCgCCGCg -3'
miRNA:   3'- aCGCCGUUgAGGCGauua----GAGG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 32566 0.69 0.767054
Target:  5'- cGCGGUAGCcgCCGCaacGUCgcgCaCCCGCg -3'
miRNA:   3'- aCGCCGUUGa-GGCGau-UAGa--G-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 6242 0.69 0.767054
Target:  5'- cUGCGGCGGCcCCGCgga--UCCUCAg -3'
miRNA:   3'- -ACGCCGUUGaGGCGauuagAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 2660 0.71 0.636572
Target:  5'- aGCGGCAGCUCUGacgucCUAGUCgggUCCGCa -3'
miRNA:   3'- aCGCCGUUGAGGC-----GAUUAGag-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 102820 0.71 0.636572
Target:  5'- aUGCGGCGcCUCCGuCUAGUCgauUCCAUg -3'
miRNA:   3'- -ACGCCGUuGAGGC-GAUUAGag-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 150923 0.71 0.657168
Target:  5'- aGCGGCGACcgugggaaaaUCUGCgggcAUUUUCCCACg -3'
miRNA:   3'- aCGCCGUUG----------AGGCGau--UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 59292 0.7 0.705121
Target:  5'- cUGCGGCGucuGCcguuccgccgcauaUCCGCUcgAGUCUCUCUGCg -3'
miRNA:   3'- -ACGCCGU---UG--------------AGGCGA--UUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 160425 0.7 0.708145
Target:  5'- cGCGGC--CUCCGCUu-UCUUCCUAg -3'
miRNA:   3'- aCGCCGuuGAGGCGAuuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 79657 0.7 0.718181
Target:  5'- cGCGccGCGcCUgCCGCUGAcaaauUCUCCCCAUc -3'
miRNA:   3'- aCGC--CGUuGA-GGCGAUU-----AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 109319 0.7 0.718181
Target:  5'- cGCGGCGcuaguuagcGCUCCGaugcGUCUCCUCGa -3'
miRNA:   3'- aCGCCGU---------UGAGGCgau-UAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 38351 0.7 0.728143
Target:  5'- gGCGGaGGCUgCCGCUuuuUCUCgCCGCu -3'
miRNA:   3'- aCGCCgUUGA-GGCGAuu-AGAGgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.