miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 44 0.66 0.891178
Target:  5'- -aCGGCGAguCUCCGUaaacUGuUCUCcCCCACg -3'
miRNA:   3'- acGCCGUU--GAGGCG----AUuAGAG-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 2479 0.68 0.812888
Target:  5'- cGCGGCuGCUUCGacgaUGGUCggcgggCCUCGCg -3'
miRNA:   3'- aCGCCGuUGAGGCg---AUUAGa-----GGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 2660 0.71 0.636572
Target:  5'- aGCGGCAGCUCUGacgucCUAGUCgggUCCGCa -3'
miRNA:   3'- aCGCCGUUGAGGC-----GAUUAGag-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 3545 0.67 0.8843
Target:  5'- cGCGGCGGCgUCCaGC--AUCUCUcgugCCACu -3'
miRNA:   3'- aCGCCGUUG-AGG-CGauUAGAGG----GGUG- -5'
24475 5' -55.8 NC_005264.1 + 4364 0.68 0.82159
Target:  5'- gGCGGCAGCUCUcucuccugaGCgaAAUC-CCCCGu -3'
miRNA:   3'- aCGCCGUUGAGG---------CGa-UUAGaGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 5533 0.67 0.882897
Target:  5'- cGCGGCGuCUCgCGCggagcggguuUCUCUUCGCa -3'
miRNA:   3'- aCGCCGUuGAG-GCGauu-------AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 6242 0.69 0.767054
Target:  5'- cUGCGGCGGCcCCGCgga--UCCUCAg -3'
miRNA:   3'- -ACGCCGUUGaGGCGauuagAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 6437 0.67 0.862327
Target:  5'- cGCGGCGGCgUCGCUGGcggagaaCUCCUCGg -3'
miRNA:   3'- aCGCCGUUGaGGCGAUUa------GAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 7519 0.67 0.854574
Target:  5'- aGCGaCGACgUCCGCcc-UCUCCUCGCc -3'
miRNA:   3'- aCGCcGUUG-AGGCGauuAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 7890 0.68 0.794992
Target:  5'- aUGCGGCG---UCGgaGGUCUCCUCGCc -3'
miRNA:   3'- -ACGCCGUugaGGCgaUUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 10126 0.68 0.794992
Target:  5'- --aGGCAACUCCcacuGCcgaggauagUAGUCUCCaCCGCg -3'
miRNA:   3'- acgCCGUUGAGG----CG---------AUUAGAGG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 12022 0.66 0.910412
Target:  5'- gGCGGCGACcgCCGCccuUAggCgaagCgCCCGCg -3'
miRNA:   3'- aCGCCGUUGa-GGCG---AUuaGa---G-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 13380 0.68 0.82245
Target:  5'- cGCGGCucccccgagaccucCUCCGCcgcagCUCUCCGCa -3'
miRNA:   3'- aCGCCGuu------------GAGGCGauua-GAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 24354 0.66 0.900418
Target:  5'- cGCGGCAACcgCCGCagguacggaacgaagUAGUggUCCCCGa -3'
miRNA:   3'- aCGCCGUUGa-GGCG---------------AUUAg-AGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 25630 0.71 0.636572
Target:  5'- gGCGGCGguggggccgcGCUCCGCgu-UUUCCUCAa -3'
miRNA:   3'- aCGCCGU----------UGAGGCGauuAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 25772 0.66 0.916348
Target:  5'- -uUGGCAccGCUUCGCcugGAUCUgCUCACg -3'
miRNA:   3'- acGCCGU--UGAGGCGa--UUAGAgGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 26175 0.68 0.82159
Target:  5'- cGCGGCAcugucgGCggggCCGUUGGcg-CCCCACu -3'
miRNA:   3'- aCGCCGU------UGa---GGCGAUUagaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 26485 0.68 0.830117
Target:  5'- cGcCGGCAGCgcccagcgcCCGUaUAAuaucUCUCCCCGCg -3'
miRNA:   3'- aC-GCCGUUGa--------GGCG-AUU----AGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 27852 0.66 0.891178
Target:  5'- cGCGGCGGCaUCCGCccAAUgcgCCgCCGCc -3'
miRNA:   3'- aCGCCGUUG-AGGCGa-UUAga-GG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 29166 0.69 0.775562
Target:  5'- cGCGGCGAgcaggcgUUCCuCUAG-CUCCCCAg -3'
miRNA:   3'- aCGCCGUU-------GAGGcGAUUaGAGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.