miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24500 5' -51.2 NC_005264.1 + 25987 0.66 0.994523
Target:  5'- -aUAACCUCGGCAGaCGgguACAGUaUCGGc -3'
miRNA:   3'- uaGUUGGAGCUGUU-GU---UGUCGaGGCC- -5'
24500 5' -51.2 NC_005264.1 + 112969 0.67 0.987532
Target:  5'- uUUAGCCaaUCGGu--CAGCAGCUCCGc -3'
miRNA:   3'- uAGUUGG--AGCUguuGUUGUCGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 95352 0.67 0.984083
Target:  5'- -aCGGaCUCGGCGggGCGGCGGC-CCGGc -3'
miRNA:   3'- uaGUUgGAGCUGU--UGUUGUCGaGGCC- -5'
24500 5' -51.2 NC_005264.1 + 35405 1.08 0.00975
Target:  5'- cAUCAACCUCGACAACAACAGCUCCGGc -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 106508 0.66 0.993468
Target:  5'- uAUCAACgaggcggugcgCGACGGCGGCAGCgcggCCGcGg -3'
miRNA:   3'- -UAGUUGga---------GCUGUUGUUGUCGa---GGC-C- -5'
24500 5' -51.2 NC_005264.1 + 69041 0.66 0.992679
Target:  5'- aGUCGAUCUCuuUGGCcGCGGCcgCCGGg -3'
miRNA:   3'- -UAGUUGGAGcuGUUGuUGUCGa-GGCC- -5'
24500 5' -51.2 NC_005264.1 + 138672 0.66 0.992679
Target:  5'- -cCGACCgCGGCcGCAGCAGCcUCGa -3'
miRNA:   3'- uaGUUGGaGCUGuUGUUGUCGaGGCc -5'
24500 5' -51.2 NC_005264.1 + 71508 0.66 0.992679
Target:  5'- -cCAGCCUUcACAGCcaaccGCAGCgccUCCGGu -3'
miRNA:   3'- uaGUUGGAGcUGUUGu----UGUCG---AGGCC- -5'
24500 5' -51.2 NC_005264.1 + 57698 0.66 0.991589
Target:  5'- cUCGACCgCGGCAuACAGC-GCUUCGu -3'
miRNA:   3'- uAGUUGGaGCUGU-UGUUGuCGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 151892 0.67 0.987532
Target:  5'- cAUCAGCUguaugUGGCGgaggggACGGCGGCUCCa- -3'
miRNA:   3'- -UAGUUGGa----GCUGU------UGUUGUCGAGGcc -5'
24500 5' -51.2 NC_005264.1 + 8789 0.66 0.990373
Target:  5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3'
miRNA:   3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5'
24500 5' -51.2 NC_005264.1 + 65665 0.66 0.991589
Target:  5'- uGUCcGCCUCGGCGGCAAacguaucgaGGaaaCCGGa -3'
miRNA:   3'- -UAGuUGGAGCUGUUGUUg--------UCga-GGCC- -5'
24500 5' -51.2 NC_005264.1 + 156890 0.66 0.994523
Target:  5'- cGUCAACa--GGCAACGccGCGGgUUCGGg -3'
miRNA:   3'- -UAGUUGgagCUGUUGU--UGUCgAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 39087 0.66 0.990373
Target:  5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3'
miRNA:   3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5'
24500 5' -51.2 NC_005264.1 + 75717 0.66 0.99444
Target:  5'- -aCGAUCUCGGCGuACAgcgcgugGCAGUUgCGGu -3'
miRNA:   3'- uaGUUGGAGCUGU-UGU-------UGUCGAgGCC- -5'
24500 5' -51.2 NC_005264.1 + 19174 0.66 0.991589
Target:  5'- -aCAACCagGAU---GAUGGCUCCGGg -3'
miRNA:   3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 137538 0.66 0.989024
Target:  5'- gGUCGGCCUCGGCGACGuggUAGgUCa-- -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUu--GUCgAGgcc -5'
24500 5' -51.2 NC_005264.1 + 35687 0.67 0.985888
Target:  5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3'
miRNA:   3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 151178 0.66 0.993655
Target:  5'- gGUCGaauugcGCgaCGACGACAGCAGCccugCCGc -3'
miRNA:   3'- -UAGU------UGgaGCUGUUGUUGUCGa---GGCc -5'
24500 5' -51.2 NC_005264.1 + 2497 0.66 0.992679
Target:  5'- gGUCGgcggGCCUCGcGCGACuuCAGCg-CGGg -3'
miRNA:   3'- -UAGU----UGGAGC-UGUUGuuGUCGagGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.