miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 3' -57.9 NC_005264.1 + 29898 1.11 0.001503
Target:  5'- aUGGCGGCGAAACGCCCUACUGCCAGCc -3'
miRNA:   3'- -ACCGCCGCUUUGCGGGAUGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 129611 0.8 0.176741
Target:  5'- cGGCGGCGAagcuucucgaguaGACGCCgaGCgccGCCAGCc -3'
miRNA:   3'- aCCGCCGCU-------------UUGCGGgaUGa--CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 83735 0.8 0.177181
Target:  5'- cGGCGGCaGAGAUGCCCU-CUG-CGGCa -3'
miRNA:   3'- aCCGCCG-CUUUGCGGGAuGACgGUCG- -5'
24507 3' -57.9 NC_005264.1 + 151541 0.8 0.1862
Target:  5'- gGGCGGCGuGGACGCCCUACc-CUGGCg -3'
miRNA:   3'- aCCGCCGC-UUUGCGGGAUGacGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 66200 0.78 0.237552
Target:  5'- cGGCgGGCGguGCGCCUccGCgGCCAGCg -3'
miRNA:   3'- aCCG-CCGCuuUGCGGGa-UGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 104927 0.77 0.255121
Target:  5'- aGGCGGCGGAACcCCCaGCcgUGCCAaGCg -3'
miRNA:   3'- aCCGCCGCUUUGcGGGaUG--ACGGU-CG- -5'
24507 3' -57.9 NC_005264.1 + 116793 0.77 0.280187
Target:  5'- cGGaacaGGCGAuuGCGCCCUgGCaucgGCCAGCg -3'
miRNA:   3'- aCCg---CCGCUu-UGCGGGA-UGa---CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 44240 0.77 0.286751
Target:  5'- aGcGCGGCGAAGuCGCCCaagUGCUGuUCGGCg -3'
miRNA:   3'- aC-CGCCGCUUU-GCGGG---AUGAC-GGUCG- -5'
24507 3' -57.9 NC_005264.1 + 95364 0.76 0.32139
Target:  5'- gGGCGGCGcgugcCGCCaaACUGCCAGg -3'
miRNA:   3'- aCCGCCGCuuu--GCGGgaUGACGGUCg -5'
24507 3' -57.9 NC_005264.1 + 154819 0.75 0.336097
Target:  5'- cGGUGGCGccgucguggcGGGCGCCU--CUGCCGGCc -3'
miRNA:   3'- aCCGCCGC----------UUUGCGGGauGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 35793 0.75 0.336097
Target:  5'- cGGUGGCGccgucguggcGGGCGCCU--CUGCCGGCc -3'
miRNA:   3'- aCCGCCGC----------UUUGCGGGauGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 31612 0.75 0.343632
Target:  5'- aGGCGGCGcgcauCGCCCUGCgaccaUGCCucggGGCu -3'
miRNA:   3'- aCCGCCGCuuu--GCGGGAUG-----ACGG----UCG- -5'
24507 3' -57.9 NC_005264.1 + 150639 0.75 0.343632
Target:  5'- aGGCGGCGcgcauCGCCCUGCgaccaUGCCucggGGCu -3'
miRNA:   3'- aCCGCCGCuuu--GCGGGAUG-----ACGG----UCG- -5'
24507 3' -57.9 NC_005264.1 + 120500 0.75 0.359065
Target:  5'- aGGUGGCGGgggcGAgGCCCUcauagacaaacuGCuUGCCGGCa -3'
miRNA:   3'- aCCGCCGCU----UUgCGGGA------------UG-ACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 158840 0.74 0.372559
Target:  5'- cUGGUgGGCGAGGaggcaugugcCGCCCUGCUuggcgguaaagccgGCCGGCg -3'
miRNA:   3'- -ACCG-CCGCUUU----------GCGGGAUGA--------------CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 39814 0.74 0.372559
Target:  5'- cUGGUgGGCGAGGaggcaugugcCGCCCUGCUuggcgguaaagccgGCCGGCg -3'
miRNA:   3'- -ACCG-CCGCUUU----------GCGGGAUGA--------------CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 82364 0.74 0.414198
Target:  5'- uUGGCGGCGAAGCGgagcacuucgcacaCCaCcGCUGCCuucuGCa -3'
miRNA:   3'- -ACCGCCGCUUUGC--------------GG-GaUGACGGu---CG- -5'
24507 3' -57.9 NC_005264.1 + 145787 0.73 0.425484
Target:  5'- aUGGCGGuCGgcAUGCUCUuagcggccgcGCUGCUGGCg -3'
miRNA:   3'- -ACCGCC-GCuuUGCGGGA----------UGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 90672 0.73 0.43429
Target:  5'- cUGGCGGCuauGAucgagucuAGCGCCUUGagcGCCAGCa -3'
miRNA:   3'- -ACCGCCG---CU--------UUGCGGGAUga-CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 87182 0.73 0.4432
Target:  5'- cGGUuuacccaaucuGGCGA--CGCCCUGCUG-CAGCa -3'
miRNA:   3'- aCCG-----------CCGCUuuGCGGGAUGACgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.