miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 3' -57.9 NC_005264.1 + 137 0.7 0.637461
Target:  5'- cGGCGGC----CGCCUUAacGCCGGCg -3'
miRNA:   3'- aCCGCCGcuuuGCGGGAUgaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 1143 0.66 0.827631
Target:  5'- gGGCGcaCGGGACGaUCCggccgccaguCUGCCGGCg -3'
miRNA:   3'- aCCGCc-GCUUUGC-GGGau--------GACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 2179 0.68 0.746608
Target:  5'- -cGCGGcCGuuGC-CCCUccAUUGCCGGCg -3'
miRNA:   3'- acCGCC-GCuuUGcGGGA--UGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 3412 0.67 0.764588
Target:  5'- gUGcGCGGgGGAgggacguagggccGCGCCCgcGCUGCUcGCa -3'
miRNA:   3'- -AC-CGCCgCUU-------------UGCGGGa-UGACGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 3995 0.73 0.4432
Target:  5'- cGGCGGCGgcGgGUUCU-CUGUCGGCu -3'
miRNA:   3'- aCCGCCGCuuUgCGGGAuGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 5235 0.68 0.737
Target:  5'- aUGcGCGaGCaGGACGCCCUGCUG--GGCu -3'
miRNA:   3'- -AC-CGC-CGcUUUGCGGGAUGACggUCG- -5'
24507 3' -57.9 NC_005264.1 + 5825 0.68 0.727302
Target:  5'- cGGCGGCG-GugGCCgCcACUcGCCuGGCc -3'
miRNA:   3'- aCCGCCGCuUugCGG-GaUGA-CGG-UCG- -5'
24507 3' -57.9 NC_005264.1 + 6466 0.69 0.677786
Target:  5'- cGGCGGCGcggcGAACGUCggGgUGCgCGGCc -3'
miRNA:   3'- aCCGCCGC----UUUGCGGgaUgACG-GUCG- -5'
24507 3' -57.9 NC_005264.1 + 6626 0.7 0.62735
Target:  5'- aGGCaGGUGAAguuggaccuGCGCCCcgACauauaGCCGGCg -3'
miRNA:   3'- aCCG-CCGCUU---------UGCGGGa-UGa----CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 6832 0.7 0.62735
Target:  5'- aGGCGGCG--GCGa-CUAUggcGCCAGCg -3'
miRNA:   3'- aCCGCCGCuuUGCggGAUGa--CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 7057 0.69 0.657664
Target:  5'- -aGCGGCGAcGGCGCCg----GCCGGCg -3'
miRNA:   3'- acCGCCGCU-UUGCGGgaugaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 7870 0.71 0.55707
Target:  5'- gGGCGGCGucGGCGCCCcagaUG-CGGCg -3'
miRNA:   3'- aCCGCCGCu-UUGCGGGaug-ACgGUCG- -5'
24507 3' -57.9 NC_005264.1 + 8009 0.7 0.637461
Target:  5'- gGGcCGGCaGAGGCGCCCgccacgACggcGCCAccGCg -3'
miRNA:   3'- aCC-GCCG-CUUUGCGGGa-----UGa--CGGU--CG- -5'
24507 3' -57.9 NC_005264.1 + 8782 0.67 0.765523
Target:  5'- cGGCgGGCGu--CGgCCaggACgGCCAGCg -3'
miRNA:   3'- aCCG-CCGCuuuGCgGGa--UGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 9345 0.69 0.647569
Target:  5'- gGGCGGC----CGCCgUuuUGCCGGCa -3'
miRNA:   3'- aCCGCCGcuuuGCGGgAugACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 9607 0.66 0.851806
Target:  5'- aGGCGacGCGAAcuGCGCUgaGCagGCCAGa -3'
miRNA:   3'- aCCGC--CGCUU--UGCGGgaUGa-CGGUCg -5'
24507 3' -57.9 NC_005264.1 + 11429 0.72 0.479829
Target:  5'- -cGCGGCG-GACGCCg-GCcGCCGGCa -3'
miRNA:   3'- acCGCCGCuUUGCGGgaUGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 11765 0.66 0.851027
Target:  5'- gGcGCGGCGAaacgguuGACGCUCU-CguagGCCgAGCc -3'
miRNA:   3'- aC-CGCCGCU-------UUGCGGGAuGa---CGG-UCG- -5'
24507 3' -57.9 NC_005264.1 + 11872 0.69 0.687797
Target:  5'- --aCGGUaGAACGCCUUGCaGCCGGUg -3'
miRNA:   3'- accGCCGcUUUGCGGGAUGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 12021 0.73 0.47053
Target:  5'- cGGCGGCGAccgcCGCCCUuagGCgaagcGCCcGCg -3'
miRNA:   3'- aCCGCCGCUuu--GCGGGA---UGa----CGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.