miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 3' -57.9 NC_005264.1 + 67054 0.71 0.576992
Target:  5'- aGGCGGCgGAAGCGCCUggaacgagUACUcgcacGCC-GCg -3'
miRNA:   3'- aCCGCCG-CUUUGCGGG--------AUGA-----CGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 157383 0.72 0.517878
Target:  5'- gGGCGGCGggGCGguuaggaCCUcCU-CCGGCg -3'
miRNA:   3'- aCCGCCGCuuUGCg------GGAuGAcGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 78740 0.71 0.533435
Target:  5'- cGGCGGUGAuuugccaucagauGCGCCC-GCUGCUccGCa -3'
miRNA:   3'- aCCGCCGCUu------------UGCGGGaUGACGGu-CG- -5'
24507 3' -57.9 NC_005264.1 + 107208 0.71 0.535392
Target:  5'- aGGCGGCGgcGCGCgCgguuggcauucgGC-GCCAGCc -3'
miRNA:   3'- aCCGCCGCuuUGCGgGa-----------UGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 50274 0.71 0.537351
Target:  5'- aUGGCcGCGGAgaucaccaACGCCCUAUuucggcgGCCGGUg -3'
miRNA:   3'- -ACCGcCGCUU--------UGCGGGAUGa------CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 156156 0.71 0.547182
Target:  5'- aGGCGGCcgucuCGgCCUcGCUGCUGGCg -3'
miRNA:   3'- aCCGCCGcuuu-GCgGGA-UGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 99845 0.71 0.55707
Target:  5'- cGGCGGCaGAAGCGCU--ACUGaCguGCg -3'
miRNA:   3'- aCCGCCG-CUUUGCGGgaUGAC-GguCG- -5'
24507 3' -57.9 NC_005264.1 + 126896 0.71 0.55707
Target:  5'- gGGCGGCGucGGCGCCCcagaUG-CGGCg -3'
miRNA:   3'- aCCGCCGCu-UUGCGGGaug-ACgGUCG- -5'
24507 3' -57.9 NC_005264.1 + 43409 0.71 0.576992
Target:  5'- gGGCaGCGAGAuCGCCC----GCCAGCc -3'
miRNA:   3'- aCCGcCGCUUU-GCGGGaugaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 106245 0.72 0.489218
Target:  5'- cGGUcGCGAGGCGCucgcgCCUGCUGaCGGCg -3'
miRNA:   3'- aCCGcCGCUUUGCG-----GGAUGACgGUCG- -5'
24507 3' -57.9 NC_005264.1 + 130456 0.72 0.479829
Target:  5'- -cGCGGCG-GACGCCg-GCcGCCGGCa -3'
miRNA:   3'- acCGCCGCuUUGCGGgaUGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 131048 0.73 0.47053
Target:  5'- cGGCGGCGAccgcCGCCCUuagGCgaagcGCCcGCg -3'
miRNA:   3'- aCCGCCGCUuu--GCGGGA---UGa----CGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 66200 0.78 0.237552
Target:  5'- cGGCgGGCGguGCGCCUccGCgGCCAGCg -3'
miRNA:   3'- aCCG-CCGCuuUGCGGGa-UGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 95364 0.76 0.32139
Target:  5'- gGGCGGCGcgugcCGCCaaACUGCCAGg -3'
miRNA:   3'- aCCGCCGCuuu--GCGGgaUGACGGUCg -5'
24507 3' -57.9 NC_005264.1 + 154819 0.75 0.336097
Target:  5'- cGGUGGCGccgucguggcGGGCGCCU--CUGCCGGCc -3'
miRNA:   3'- aCCGCCGC----------UUUGCGGGauGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 150639 0.75 0.343632
Target:  5'- aGGCGGCGcgcauCGCCCUGCgaccaUGCCucggGGCu -3'
miRNA:   3'- aCCGCCGCuuu--GCGGGAUG-----ACGG----UCG- -5'
24507 3' -57.9 NC_005264.1 + 158840 0.74 0.372559
Target:  5'- cUGGUgGGCGAGGaggcaugugcCGCCCUGCUuggcgguaaagccgGCCGGCg -3'
miRNA:   3'- -ACCG-CCGCUUU----------GCGGGAUGA--------------CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 82364 0.74 0.414198
Target:  5'- uUGGCGGCGAAGCGgagcacuucgcacaCCaCcGCUGCCuucuGCa -3'
miRNA:   3'- -ACCGCCGCUUUGC--------------GG-GaUGACGGu---CG- -5'
24507 3' -57.9 NC_005264.1 + 3995 0.73 0.4432
Target:  5'- cGGCGGCGgcGgGUUCU-CUGUCGGCu -3'
miRNA:   3'- aCCGCCGCuuUgCGGGAuGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 87182 0.73 0.4432
Target:  5'- cGGUuuacccaaucuGGCGA--CGCCCUGCUG-CAGCa -3'
miRNA:   3'- aCCG-----------CCGCUuuGCGGGAUGACgGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.