miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 1542 0.73 0.908435
Target:  5'- cGGCGUugACCgCGccGGCA--AUAGGCGGGCc -3'
miRNA:   3'- -CCGCA--UGG-GU--UUGUucUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 120569 0.73 0.908435
Target:  5'- cGGCGUugACCgCGccGGCA--AUAGGCGGGCc -3'
miRNA:   3'- -CCGCA--UGG-GU--UUGUucUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 61273 0.73 0.910936
Target:  5'- cGGCGUACCCGuauuccagagguuCGAGAUAcGCGGu- -3'
miRNA:   3'- -CCGCAUGGGUuu-----------GUUCUAUuCGCCcg -5'
24514 5' -49.7 NC_005264.1 + 30078 0.73 0.914007
Target:  5'- cGGCGccgccgcGCCCGGACAgaaucgcgagucgAGAU--GCGGGCg -3'
miRNA:   3'- -CCGCa------UGGGUUUGU-------------UCUAuuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 133494 0.73 0.917013
Target:  5'- cGGCGUACCCGGcagacgucguagccGCAGGA--GGCGcuguguccaugcauGGCg -3'
miRNA:   3'- -CCGCAUGGGUU--------------UGUUCUauUCGC--------------CCG- -5'
24514 5' -49.7 NC_005264.1 + 154620 0.72 0.920537
Target:  5'- uGGCGUACUCGGACcAGcgGccGCGGGg -3'
miRNA:   3'- -CCGCAUGGGUUUGuUCuaUu-CGCCCg -5'
24514 5' -49.7 NC_005264.1 + 158094 0.72 0.920537
Target:  5'- cGGCGguccaccCCCGGACGccGGcucGGCGGGCa -3'
miRNA:   3'- -CCGCau-----GGGUUUGU--UCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 39067 0.72 0.920537
Target:  5'- cGGCGguccaccCCCGGACGccGGcucGGCGGGCa -3'
miRNA:   3'- -CCGCau-----GGGUUUGU--UCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 38812 0.72 0.926206
Target:  5'- cGGCG-ACCCcggcgcGGACGAGAacgacgacgaUGcGCGGGCa -3'
miRNA:   3'- -CCGCaUGGG------UUUGUUCU----------AUuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 97759 0.72 0.926206
Target:  5'- cGGUGUucguguuugACCCucACGgauGGAUGGGCGGcGCg -3'
miRNA:   3'- -CCGCA---------UGGGuuUGU---UCUAUUCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 59984 0.72 0.926206
Target:  5'- cGGCGgugGCCgCGAGCGAGAcggccGCGuGGCc -3'
miRNA:   3'- -CCGCa--UGG-GUUUGUUCUauu--CGC-CCG- -5'
24514 5' -49.7 NC_005264.1 + 100483 0.72 0.926206
Target:  5'- cGGCGgccaggGCCCuggaGGGGUu-GCGGGCg -3'
miRNA:   3'- -CCGCa-----UGGGuuugUUCUAuuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 113267 0.72 0.926206
Target:  5'- cGGCGUGCgCCGAG-AAGGUGaAGCGGucGCu -3'
miRNA:   3'- -CCGCAUG-GGUUUgUUCUAU-UCGCC--CG- -5'
24514 5' -49.7 NC_005264.1 + 157838 0.72 0.926206
Target:  5'- cGGCG-ACCCcggcgcGGACGAGAacgacgacgaUGcGCGGGCa -3'
miRNA:   3'- -CCGCaUGGG------UUUGUUCU----------AUuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 74375 0.72 0.931618
Target:  5'- --gGUACCUGAACugcccuGGGU-AGCGGGCg -3'
miRNA:   3'- ccgCAUGGGUUUGu-----UCUAuUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 18056 0.72 0.931618
Target:  5'- cGGCGgcGCCgCGAGCcAGGgcgcGCGGGCa -3'
miRNA:   3'- -CCGCa-UGG-GUUUGuUCUauu-CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 38314 0.72 0.936774
Target:  5'- cGCGgagGCC--GACGAGGguuGGCGGGCc -3'
miRNA:   3'- cCGCa--UGGguUUGUUCUau-UCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 157341 0.72 0.936774
Target:  5'- cGCGgagGCC--GACGAGGguuGGCGGGCc -3'
miRNA:   3'- cCGCa--UGGguUUGUUCUau-UCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 124321 0.71 0.946323
Target:  5'- cGGCGgcugACCCGuggGGCGGGcgAcuGGCGGGa -3'
miRNA:   3'- -CCGCa---UGGGU---UUGUUCuaU--UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 5294 0.71 0.946323
Target:  5'- cGGCGgcugACCCGuggGGCGGGcgAcuGGCGGGa -3'
miRNA:   3'- -CCGCa---UGGGU---UUGUUCuaU--UCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.