miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 19005 1.16 0.004875
Target:  5'- gGGCGUACCCAAACAAGAUAAGCGGGCg -3'
miRNA:   3'- -CCGCAUGGGUUUGUUCUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 83034 0.8 0.571556
Target:  5'- cGGCGUACgCGggauaGACAAucUAAGCGGGCu -3'
miRNA:   3'- -CCGCAUGgGU-----UUGUUcuAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 111106 0.79 0.645462
Target:  5'- gGGCuacACCCu--CGAGAUGGGCGGGUg -3'
miRNA:   3'- -CCGca-UGGGuuuGUUCUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 43998 0.78 0.677138
Target:  5'- aGGCGgACUUggGCAGGGUcgAGGUGGGCc -3'
miRNA:   3'- -CCGCaUGGGuuUGUUCUA--UUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 77628 0.78 0.698073
Target:  5'- cGUGUugaaguaagACCCGAGCAAGAUGucgaAGCGGGa -3'
miRNA:   3'- cCGCA---------UGGGUUUGUUCUAU----UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 66523 0.77 0.708456
Target:  5'- aGCGUGCCCuGACGAcGAccgcguuGCGGGCg -3'
miRNA:   3'- cCGCAUGGGuUUGUU-CUauu----CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 91891 0.77 0.73915
Target:  5'- gGGUGguugGCCgcGGCAGcGAUGGGCGGGCg -3'
miRNA:   3'- -CCGCa---UGGguUUGUU-CUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 81888 0.76 0.788171
Target:  5'- uGGC--GCCUuGGCGGcGAUGGGCGGGCg -3'
miRNA:   3'- -CCGcaUGGGuUUGUU-CUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 75467 0.75 0.806796
Target:  5'- aGGaCGUGCUUAGagaacacggccACAGGGaAAGCGGGCg -3'
miRNA:   3'- -CC-GCAUGGGUU-----------UGUUCUaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 69382 0.75 0.806796
Target:  5'- cGCGguuauUCCAGAUAcGAUGGGCGGGUa -3'
miRNA:   3'- cCGCau---GGGUUUGUuCUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 1067 0.75 0.824742
Target:  5'- cGGCacGUGUCCAucCAAGGUGGGCGGGg -3'
miRNA:   3'- -CCG--CAUGGGUuuGUUCUAUUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 120094 0.75 0.824742
Target:  5'- cGGCacGUGUCCAucCAAGGUGGGCGGGg -3'
miRNA:   3'- -CCG--CAUGGGUuuGUUCUAUUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 142977 0.75 0.833438
Target:  5'- cGGCGgucuCUCGGGCAuGA--GGCGGGCg -3'
miRNA:   3'- -CCGCau--GGGUUUGUuCUauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 14094 0.75 0.833438
Target:  5'- aGGCGUGCCUGGACGGGcAUAuccaugcucGGCGGuugGCg -3'
miRNA:   3'- -CCGCAUGGGUUUGUUC-UAU---------UCGCC---CG- -5'
24514 5' -49.7 NC_005264.1 + 56343 0.75 0.833438
Target:  5'- uGGCGgagcccCCCAAACAuGGUcaccaAAGCGGGUu -3'
miRNA:   3'- -CCGCau----GGGUUUGUuCUA-----UUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 28603 0.74 0.858316
Target:  5'- gGGCGUGCCCGAcugGCuuuAGcucUGAGUGGGa -3'
miRNA:   3'- -CCGCAUGGGUU---UGu--UCu--AUUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 2613 0.74 0.858316
Target:  5'- aGGCGcgAgCCGAGCAGGcgGGGCGGaGUc -3'
miRNA:   3'- -CCGCa-UgGGUUUGUUCuaUUCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 121640 0.74 0.858316
Target:  5'- aGGCGcgAgCCGAGCAGGcgGGGCGGaGUc -3'
miRNA:   3'- -CCGCa-UgGGUUUGUUCuaUUCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 131494 0.74 0.881226
Target:  5'- aGCGUGCCCGAGCAccu--GGgGGGUu -3'
miRNA:   3'- cCGCAUGGGUUUGUucuauUCgCCCG- -5'
24514 5' -49.7 NC_005264.1 + 13799 0.74 0.881226
Target:  5'- cGGUGaACCCGGGCAGGGggcuGUGGGa -3'
miRNA:   3'- -CCGCaUGGGUUUGUUCUauu-CGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.