miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 236 0.66 0.997544
Target:  5'- -cCGUGCCUGGcgccAC-AGcgAGGCGGGCc -3'
miRNA:   3'- ccGCAUGGGUU----UGuUCuaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 867 0.7 0.970004
Target:  5'- aGGCGUugccgcGCCCGGACGuacgacuGGGUGuacggccccgugucGCGGGCc -3'
miRNA:   3'- -CCGCA------UGGGUUUGU-------UCUAUu-------------CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 1067 0.75 0.824742
Target:  5'- cGGCacGUGUCCAucCAAGGUGGGCGGGg -3'
miRNA:   3'- -CCG--CAUGGGUuuGUUCUAUUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 1542 0.73 0.908435
Target:  5'- cGGCGUugACCgCGccGGCA--AUAGGCGGGCc -3'
miRNA:   3'- -CCGCA--UGG-GU--UUGUucUAUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 2140 0.66 0.99828
Target:  5'- uGCGagcauuaACCCAuGCGAGcAUAGaccccuGCGGGCa -3'
miRNA:   3'- cCGCa------UGGGUuUGUUC-UAUU------CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 2448 0.66 0.99828
Target:  5'- cGUGUGCCCGuuCuucccgGAGCuGGGCc -3'
miRNA:   3'- cCGCAUGGGUuuGuucua-UUCG-CCCG- -5'
24514 5' -49.7 NC_005264.1 + 2481 0.68 0.990314
Target:  5'- cGGC-UGCUUcGACGAuGGUcGGCGGGCc -3'
miRNA:   3'- -CCGcAUGGGuUUGUU-CUAuUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 2613 0.74 0.858316
Target:  5'- aGGCGcgAgCCGAGCAGGcgGGGCGGaGUc -3'
miRNA:   3'- -CCGCa-UgGGUUUGUUCuaUUCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 3996 0.69 0.982779
Target:  5'- gGGCGgcacaugccuccucGCCCAc-CAGGGgcuuGGCGGGCc -3'
miRNA:   3'- -CCGCa-------------UGGGUuuGUUCUau--UCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 4460 0.66 0.99828
Target:  5'- cGGCu--CCCAuaGGCGAGGcUAAGCGGa- -3'
miRNA:   3'- -CCGcauGGGU--UUGUUCU-AUUCGCCcg -5'
24514 5' -49.7 NC_005264.1 + 5294 0.71 0.946323
Target:  5'- cGGCGgcugACCCGuggGGCGGGcgAcuGGCGGGa -3'
miRNA:   3'- -CCGCa---UGGGU---UUGUUCuaU--UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 5678 0.66 0.998572
Target:  5'- uGCGUuCCCAcgaguAC-AGAgcgcGCGGGCa -3'
miRNA:   3'- cCGCAuGGGUu----UGuUCUauu-CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 6052 0.67 0.995961
Target:  5'- aGGCGaguCUCAAGCAGGAc-AGCaGGUa -3'
miRNA:   3'- -CCGCau-GGGUUUGUUCUauUCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 6102 0.66 0.99794
Target:  5'- cGGCGgcagACCCGGAUGacguccaucAGGUGcgGGaGGGCg -3'
miRNA:   3'- -CCGCa---UGGGUUUGU---------UCUAU--UCgCCCG- -5'
24514 5' -49.7 NC_005264.1 + 8481 0.68 0.991541
Target:  5'- uGgGUcCCCAAGCAGca-GAGUGGGCc -3'
miRNA:   3'- cCgCAuGGGUUUGUUcuaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 13799 0.74 0.881226
Target:  5'- cGGUGaACCCGGGCAGGGggcuGUGGGa -3'
miRNA:   3'- -CCGCaUGGGUUUGUUCUauu-CGCCCg -5'
24514 5' -49.7 NC_005264.1 + 14094 0.75 0.833438
Target:  5'- aGGCGUGCCUGGACGGGcAUAuccaugcucGGCGGuugGCg -3'
miRNA:   3'- -CCGCAUGGGUUUGUUC-UAU---------UCGCC---CG- -5'
24514 5' -49.7 NC_005264.1 + 15569 0.69 0.97978
Target:  5'- cGGCGUGCagcucguggCCAAGCuu-----GCGGGCg -3'
miRNA:   3'- -CCGCAUG---------GGUUUGuucuauuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 16550 0.68 0.993626
Target:  5'- cGCGUAUUUcAGCGcGGUGGGCGGcGCc -3'
miRNA:   3'- cCGCAUGGGuUUGUuCUAUUCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 17171 0.67 0.995961
Target:  5'- --aGUACCCAcuugAAGGUuccgccGGCGGGCa -3'
miRNA:   3'- ccgCAUGGGUuug-UUCUAu-----UCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.