Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24514 | 5' | -49.7 | NC_005264.1 | + | 44098 | 0.65 | 0.998751 |
Target: 5'- aGCuUGCCCGAagacuggggaggggGCGGGAUAgcggcgauuacgAGCGGGa -3' miRNA: 3'- cCGcAUGGGUU--------------UGUUCUAU------------UCGCCCg -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 119263 | 0.66 | 0.997544 |
Target: 5'- -cCGUGCCUGGcgccAC-AGcgAGGCGGGCc -3' miRNA: 3'- ccGCAUGGGUU----UGuUCuaUUCGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 2448 | 0.66 | 0.99828 |
Target: 5'- cGUGUGCCCGuuCuucccgGAGCuGGGCc -3' miRNA: 3'- cCGCAUGGGUuuGuucua-UUCG-CCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 161192 | 0.66 | 0.99794 |
Target: 5'- uGGCGUaacGCCCGGAaaGAGAU-GGCaGGUu -3' miRNA: 3'- -CCGCA---UGGGUUUg-UUCUAuUCGcCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 96249 | 0.66 | 0.998403 |
Target: 5'- cGGCGcaGCCCAgcgagagccuguaccAGCAGGuggcGGCGGaGCu -3' miRNA: 3'- -CCGCa-UGGGU---------------UUGUUCuau-UCGCC-CG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 125129 | 0.66 | 0.99794 |
Target: 5'- cGGCGgcagACCCGGAUGacguccaucAGGUGcgGGaGGGCg -3' miRNA: 3'- -CCGCa---UGGGUUUGU---------UCUAU--UCgCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 146349 | 0.66 | 0.99828 |
Target: 5'- cGGCGUGCCuCGAccccGCAGGccaccGCGGcuGCg -3' miRNA: 3'- -CCGCAUGG-GUU----UGUUCuauu-CGCC--CG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 45748 | 0.66 | 0.998545 |
Target: 5'- cGGuCGUGCCguaucuagcacaCAGACAGcGAUGGGCGccggagcGGCu -3' miRNA: 3'- -CC-GCAUGG------------GUUUGUU-CUAUUCGC-------CCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 4460 | 0.66 | 0.99828 |
Target: 5'- cGGCu--CCCAuaGGCGAGGcUAAGCGGa- -3' miRNA: 3'- -CCGcauGGGU--UUGUUCU-AUUCGCCcg -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 39373 | 0.66 | 0.997544 |
Target: 5'- cGCaUGCCCGuACAuagAGGUcauGAGCGaGGCg -3' miRNA: 3'- cCGcAUGGGUuUGU---UCUA---UUCGC-CCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 121167 | 0.66 | 0.99828 |
Target: 5'- uGCGagcauuaACCCAuGCGAGcAUAGaccccuGCGGGCa -3' miRNA: 3'- cCGCa------UGGGUuUGUUC-UAUU------CGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 19348 | 0.66 | 0.998489 |
Target: 5'- cGCGUAgCCAuuccaggagcaaccGGCGucAGGUAAGCGuGCg -3' miRNA: 3'- cCGCAUgGGU--------------UUGU--UCUAUUCGCcCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 51811 | 0.66 | 0.998545 |
Target: 5'- cGCGaGCCaccgcuuCGAAcCAGGAgagGGGUGGGCg -3' miRNA: 3'- cCGCaUGG-------GUUU-GUUCUa--UUCGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 124705 | 0.66 | 0.998572 |
Target: 5'- uGCGUuCCCAcgaguAC-AGAgcgcGCGGGCa -3' miRNA: 3'- cCGCAuGGGUu----UGuUCUauu-CGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 26772 | 0.66 | 0.998403 |
Target: 5'- cGGCgGUAUCCGAcucgauccuGCAcgcgggcuuccacgaGGAgAAGUGGGCc -3' miRNA: 3'- -CCG-CAUGGGUU---------UGU---------------UCUaUUCGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 121475 | 0.66 | 0.99828 |
Target: 5'- cGUGUGCCCGuuCuucccgGAGCuGGGCc -3' miRNA: 3'- cCGCAUGGGUuuGuucua-UUCG-CCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 23288 | 0.66 | 0.998489 |
Target: 5'- cGCGUGCagCGAgcgcaaacaucgccACGAGugcGGCGGGCc -3' miRNA: 3'- cCGCAUGg-GUU--------------UGUUCuauUCGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 5678 | 0.66 | 0.998572 |
Target: 5'- uGCGUuCCCAcgaguAC-AGAgcgcGCGGGCa -3' miRNA: 3'- cCGCAuGGGUu----UGuUCUauu-CGCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 125714 | 0.66 | 0.99828 |
Target: 5'- cGGCGccuggUGCCCcugugGAACGAGu--AGuUGGGCg -3' miRNA: 3'- -CCGC-----AUGGG-----UUUGUUCuauUC-GCCCG- -5' |
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24514 | 5' | -49.7 | NC_005264.1 | + | 111835 | 0.66 | 0.997709 |
Target: 5'- aGGUGUA-CCGAGCAGGAuuucggcaacgugcuUAAGgccuucgaguuCGGGCu -3' miRNA: 3'- -CCGCAUgGGUUUGUUCU---------------AUUC-----------GCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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