Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24517 | 5' | -56.2 | NC_005264.1 | + | 121641 | 0.66 | 0.901141 |
Target: 5'- gGCGCGagccGAgcagGCGggGCGGAGuCUUCUGUCu -3' miRNA: 3'- -UGUGC----CUa---CGCa-CGCCUU-GGAGACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 108600 | 0.66 | 0.901141 |
Target: 5'- gACACGuugGCGcGCGGGgccGCCUCgacacagGCCu -3' miRNA: 3'- -UGUGCcuaCGCaCGCCU---UGGAGa------CGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 123033 | 0.66 | 0.894713 |
Target: 5'- -gGCGGAUGCGUGCcGcGCaUC-GCCa -3' miRNA: 3'- ugUGCCUACGCACGcCuUGgAGaCGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 71627 | 0.66 | 0.894713 |
Target: 5'- -gGCGGcgGCagagauagcccaGUGCGcGAACCUgUGCg -3' miRNA: 3'- ugUGCCuaCG------------CACGC-CUUGGAgACGg -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 80207 | 0.66 | 0.894713 |
Target: 5'- gGCGCGGGacGUGUGUGaGAAgCUUggGCCg -3' miRNA: 3'- -UGUGCCUa-CGCACGC-CUUgGAGa-CGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 155951 | 0.66 | 0.894713 |
Target: 5'- cGCugGGAcUGCGcggcucGCGGAcGCUcuggCUGCCg -3' miRNA: 3'- -UGugCCU-ACGCa-----CGCCU-UGGa---GACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 38352 | 0.66 | 0.901141 |
Target: 5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3' miRNA: 3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 2614 | 0.66 | 0.901141 |
Target: 5'- gGCGCGagccGAgcagGCGggGCGGAGuCUUCUGUCu -3' miRNA: 3'- -UGUGC----CUa---CGCa-CGCCUU-GGAGACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 43146 | 0.66 | 0.904889 |
Target: 5'- aGCACGGGUggaGCGgggaggggggggcGCGuGAGCCUCUaucgcgcuGCCu -3' miRNA: 3'- -UGUGCCUA---CGCa------------CGC-CUUGGAGA--------CGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 80745 | 0.66 | 0.919044 |
Target: 5'- uCGCGGAU-CGUGgGGAcaauCCUCgGCg -3' miRNA: 3'- uGUGCCUAcGCACgCCUu---GGAGaCGg -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 64283 | 0.66 | 0.904889 |
Target: 5'- uACGCGGGUGCcgaGUaucGCGGcccacagcgcguuGCCgCUGCCa -3' miRNA: 3'- -UGUGCCUACG---CA---CGCCu------------UGGaGACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 162173 | 0.66 | 0.904889 |
Target: 5'- aGCACGGGUggaGCGgggaggggggggcGCGuGAGCCUCUaucgcgcuGCCu -3' miRNA: 3'- -UGUGCCUA---CGCa------------CGC-CUUGGAGA--------CGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 47198 | 0.66 | 0.907341 |
Target: 5'- cCugGGAUGa--GCGGGGCCacgGCCg -3' miRNA: 3'- uGugCCUACgcaCGCCUUGGagaCGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 66217 | 0.66 | 0.921272 |
Target: 5'- cCGCGGccaGCGaaggacuuggcgagcUGCGGGccuagcAUCUCUGCCa -3' miRNA: 3'- uGUGCCua-CGC---------------ACGCCU------UGGAGACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 102204 | 0.66 | 0.924544 |
Target: 5'- gGCGgGGAucaagcugcUGCuccUGCGcGAGCCggCUGCCg -3' miRNA: 3'- -UGUgCCU---------ACGc--ACGC-CUUGGa-GACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 107715 | 0.66 | 0.901141 |
Target: 5'- cGCACGGcgGgGUGUcGAAcCCUCgugGCUu -3' miRNA: 3'- -UGUGCCuaCgCACGcCUU-GGAGa--CGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 90953 | 0.66 | 0.924544 |
Target: 5'- aACACGGuguuUGCGU-CGGGcGCCcgCgUGCCg -3' miRNA: 3'- -UGUGCCu---ACGCAcGCCU-UGGa-G-ACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 157379 | 0.66 | 0.901141 |
Target: 5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3' miRNA: 3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 148254 | 0.67 | 0.851547 |
Target: 5'- uCGCGGcgGCGUuucaCGGGACagaUUUGCCc -3' miRNA: 3'- uGUGCCuaCGCAc---GCCUUGg--AGACGG- -5' |
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24517 | 5' | -56.2 | NC_005264.1 | + | 125463 | 0.67 | 0.888058 |
Target: 5'- uCGCGGcgGCGUcgcugGCGGAGaacuCCUCgGCg -3' miRNA: 3'- uGUGCCuaCGCA-----CGCCUU----GGAGaCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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