miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24517 5' -56.2 NC_005264.1 + 157379 0.66 0.901141
Target:  5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3'
miRNA:   3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5'
24517 5' -56.2 NC_005264.1 + 1046 0.68 0.843634
Target:  5'- uCGCGGuucuUGCuccaccGUGCGGAGgCUC-GCCg -3'
miRNA:   3'- uGUGCCu---ACG------CACGCCUUgGAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 162803 0.68 0.843634
Target:  5'- uUACGGAgacucgccgUGgGUGCGGGGCgcaguUUCUGUCg -3'
miRNA:   3'- uGUGCCU---------ACgCACGCCUUG-----GAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 148254 0.67 0.851547
Target:  5'- uCGCGGcgGCGUuucaCGGGACagaUUUGCCc -3'
miRNA:   3'- uGUGCCuaCGCAc---GCCUUGg--AGACGG- -5'
24517 5' -56.2 NC_005264.1 + 72594 0.67 0.859264
Target:  5'- gGCGCGcGAUGaaGUGCucGAACCUUUGCa -3'
miRNA:   3'- -UGUGC-CUACg-CACGc-CUUGGAGACGg -5'
24517 5' -56.2 NC_005264.1 + 43007 0.67 0.881182
Target:  5'- aGCACGGcUGCGUGUGGucguACgUUU-CCg -3'
miRNA:   3'- -UGUGCCuACGCACGCCu---UGgAGAcGG- -5'
24517 5' -56.2 NC_005264.1 + 23676 0.67 0.888058
Target:  5'- aGCACGGAUuacgcaucGaCGUGCGGGAacgccgaccgacCCUCaacGCCc -3'
miRNA:   3'- -UGUGCCUA--------C-GCACGCCUU------------GGAGa--CGG- -5'
24517 5' -56.2 NC_005264.1 + 125463 0.67 0.888058
Target:  5'- uCGCGGcgGCGUcgcugGCGGAGaacuCCUCgGCg -3'
miRNA:   3'- uGUGCCuaCGCA-----CGCCUU----GGAGaCGg -5'
24517 5' -56.2 NC_005264.1 + 108600 0.66 0.901141
Target:  5'- gACACGuugGCGcGCGGGgccGCCUCgacacagGCCu -3'
miRNA:   3'- -UGUGCcuaCGCaCGCCU---UGGAGa------CGG- -5'
24517 5' -56.2 NC_005264.1 + 54601 0.68 0.835531
Target:  5'- aACGcCGGccucggcGCGUGCGGGACaUCgGCCa -3'
miRNA:   3'- -UGU-GCCua-----CGCACGCCUUGgAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 807 0.69 0.801377
Target:  5'- gUACGGcUGgGUGCGcGGccggcuuuaGCCUCUGUCu -3'
miRNA:   3'- uGUGCCuACgCACGC-CU---------UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 100371 0.69 0.792442
Target:  5'- aACAUGGGgcaaUGC-UGCGGAugCcgCUGCUg -3'
miRNA:   3'- -UGUGCCU----ACGcACGCCUugGa-GACGG- -5'
24517 5' -56.2 NC_005264.1 + 154815 0.76 0.389358
Target:  5'- gGCGCGGugGCGccgucgugGCGGGcGCCUCUGCCg -3'
miRNA:   3'- -UGUGCCuaCGCa-------CGCCU-UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 46573 0.74 0.51225
Target:  5'- cCACGGcuuccaagucgcGCGUGCGGAGgCUCUGUCc -3'
miRNA:   3'- uGUGCCua----------CGCACGCCUUgGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 123114 0.71 0.676644
Target:  5'- uGCACGGGcgGCGUcGCGGcacgacggggccGAggguguccCCUCUGCCa -3'
miRNA:   3'- -UGUGCCUa-CGCA-CGCC------------UU--------GGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 130237 0.71 0.686701
Target:  5'- uACAgGGGUGCGaaUGUuuguuuaaGGGGCCUCUagGCCa -3'
miRNA:   3'- -UGUgCCUACGC--ACG--------CCUUGGAGA--CGG- -5'
24517 5' -56.2 NC_005264.1 + 4213 0.7 0.725419
Target:  5'- cGC-CGGGUGCcgcgugccauaauGauuccaucucUGCGGAGCCUCuUGCCg -3'
miRNA:   3'- -UGuGCCUACG-------------C----------ACGCCUUGGAG-ACGG- -5'
24517 5' -56.2 NC_005264.1 + 79122 0.69 0.755363
Target:  5'- gGCACGGcgGCGUGCGcuuGCCccuUCU-CCg -3'
miRNA:   3'- -UGUGCCuaCGCACGCcu-UGG---AGAcGG- -5'
24517 5' -56.2 NC_005264.1 + 76668 0.69 0.755363
Target:  5'- cCACcGGUGCG-GCaGAagauACCUCUGCCc -3'
miRNA:   3'- uGUGcCUACGCaCGcCU----UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 3990 0.69 0.755363
Target:  5'- cGCuuCGGcgGCG-GCGGGuUCUCUGUCg -3'
miRNA:   3'- -UGu-GCCuaCGCaCGCCUuGGAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.