miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24517 5' -56.2 NC_005264.1 + 807 0.69 0.801377
Target:  5'- gUACGGcUGgGUGCGcGGccggcuuuaGCCUCUGUCu -3'
miRNA:   3'- uGUGCCuACgCACGC-CU---------UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 1046 0.68 0.843634
Target:  5'- uCGCGGuucuUGCuccaccGUGCGGAGgCUC-GCCg -3'
miRNA:   3'- uGUGCCu---ACG------CACGCCUUgGAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 2614 0.66 0.901141
Target:  5'- gGCGCGagccGAgcagGCGggGCGGAGuCUUCUGUCu -3'
miRNA:   3'- -UGUGC----CUa---CGCa-CGCCUU-GGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 3990 0.69 0.755363
Target:  5'- cGCuuCGGcgGCG-GCGGGuUCUCUGUCg -3'
miRNA:   3'- -UGu-GCCuaCGCaCGCCUuGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 4087 0.71 0.676644
Target:  5'- uGCACGGGcgGCGUcGCGGcacgacggggccGAggguguccCCUCUGCCa -3'
miRNA:   3'- -UGUGCCUa-CGCA-CGCC------------UU--------GGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 4213 0.7 0.725419
Target:  5'- cGC-CGGGUGCcgcgugccauaauGauuccaucucUGCGGAGCCUCuUGCCg -3'
miRNA:   3'- -UGuGCCUACG-------------C----------ACGCCUUGGAG-ACGG- -5'
24517 5' -56.2 NC_005264.1 + 6436 0.67 0.888058
Target:  5'- uCGCGGcgGCGUcgcugGCGGAGaacuCCUCgGCg -3'
miRNA:   3'- uGUGCCuaCGCA-----CGCCUU----GGAGaCGg -5'
24517 5' -56.2 NC_005264.1 + 11210 0.71 0.686701
Target:  5'- uACAgGGGUGCGaaUGUuuguuuaaGGGGCCUCUagGCCa -3'
miRNA:   3'- -UGUgCCUACGC--ACG--------CCUUGGAGA--CGG- -5'
24517 5' -56.2 NC_005264.1 + 15341 1.12 0.001867
Target:  5'- gACACGGAUGCGUGCGGAACCUCUGCCa -3'
miRNA:   3'- -UGUGCCUACGCACGCCUUGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 23562 0.68 0.835531
Target:  5'- cCGCGGAUGggagcuaGUGCGGAuCUUCUuGCa -3'
miRNA:   3'- uGUGCCUACg------CACGCCUuGGAGA-CGg -5'
24517 5' -56.2 NC_005264.1 + 23676 0.67 0.888058
Target:  5'- aGCACGGAUuacgcaucGaCGUGCGGGAacgccgaccgacCCUCaacGCCc -3'
miRNA:   3'- -UGUGCCUA--------C-GCACGCCUU------------GGAGa--CGG- -5'
24517 5' -56.2 NC_005264.1 + 25625 0.71 0.656429
Target:  5'- aACACGGcgGCG-GUGGGGCCgcgCU-CCg -3'
miRNA:   3'- -UGUGCCuaCGCaCGCCUUGGa--GAcGG- -5'
24517 5' -56.2 NC_005264.1 + 29322 0.69 0.801377
Target:  5'- uGCAUGGAcacaGCGccuccUGCGGcuacGACgUCUGCCg -3'
miRNA:   3'- -UGUGCCUa---CGC-----ACGCC----UUGgAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 32009 0.77 0.334077
Target:  5'- gAUAgGGAUGC-UGCGGAACCgccucgggCUGCCc -3'
miRNA:   3'- -UGUgCCUACGcACGCCUUGGa-------GACGG- -5'
24517 5' -56.2 NC_005264.1 + 35789 0.76 0.389358
Target:  5'- gGCGCGGugGCGccgucgugGCGGGcGCCUCUGCCg -3'
miRNA:   3'- -UGUGCCuaCGCa-------CGCCU-UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 38352 0.66 0.901141
Target:  5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3'
miRNA:   3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5'
24517 5' -56.2 NC_005264.1 + 43007 0.67 0.881182
Target:  5'- aGCACGGcUGCGUGUGGucguACgUUU-CCg -3'
miRNA:   3'- -UGUGCCuACGCACGCCu---UGgAGAcGG- -5'
24517 5' -56.2 NC_005264.1 + 43146 0.66 0.904889
Target:  5'- aGCACGGGUggaGCGgggaggggggggcGCGuGAGCCUCUaucgcgcuGCCu -3'
miRNA:   3'- -UGUGCCUA---CGCa------------CGC-CUUGGAGA--------CGG- -5'
24517 5' -56.2 NC_005264.1 + 43777 0.68 0.843634
Target:  5'- uUACGGAgacucgccgUGgGUGCGGGGCgcaguUUCUGUCg -3'
miRNA:   3'- uGUGCCU---------ACgCACGCCUUG-----GAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 46573 0.74 0.51225
Target:  5'- cCACGGcuuccaagucgcGCGUGCGGAGgCUCUGUCc -3'
miRNA:   3'- uGUGCCua----------CGCACGCCUUgGAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.