miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 3' -63.4 NC_005264.1 + 131656 1.1 0.000724
Target:  5'- cCCCCCGUCCCACUCGCUCGCCCUCCGg -3'
miRNA:   3'- -GGGGGCAGGGUGAGCGAGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 12629 1.1 0.000724
Target:  5'- cCCCCCGUCCCACUCGCUCGCCCUCCGg -3'
miRNA:   3'- -GGGGGCAGGGUGAGCGAGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 30253 0.78 0.137574
Target:  5'- uCCCCgGUCCCGCccgCGC-CGCUCUCCu -3'
miRNA:   3'- -GGGGgCAGGGUGa--GCGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 149280 0.78 0.137574
Target:  5'- uCCCCgGUCCCGCccgCGC-CGCUCUCCu -3'
miRNA:   3'- -GGGGgCAGGGUGa--GCGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 159934 0.75 0.205531
Target:  5'- aCUCCGUCgCuCUCGCcgUCGCCCUCCc -3'
miRNA:   3'- gGGGGCAGgGuGAGCG--AGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 40886 0.74 0.230459
Target:  5'- uUCCCGUCCguCUCGCUCGgCgaCUCCGu -3'
miRNA:   3'- gGGGGCAGGguGAGCGAGCgG--GAGGC- -5'
24520 3' -63.4 NC_005264.1 + 160228 0.74 0.252197
Target:  5'- gCCCCG-CCUGCUCgGCUCGCgCCUUCu -3'
miRNA:   3'- gGGGGCaGGGUGAG-CGAGCG-GGAGGc -5'
24520 3' -63.4 NC_005264.1 + 41201 0.74 0.252197
Target:  5'- gCCCCG-CCUGCUCgGCUCGCgCCUUCu -3'
miRNA:   3'- gGGGGCaGGGUGAG-CGAGCG-GGAGGc -5'
24520 3' -63.4 NC_005264.1 + 38544 0.73 0.28171
Target:  5'- cCCCgCCGUCCgGCcgCGaCUCGCCUcCCGg -3'
miRNA:   3'- -GGG-GGCAGGgUGa-GC-GAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 157571 0.73 0.28171
Target:  5'- cCCCgCCGUCCgGCcgCGaCUCGCCUcCCGg -3'
miRNA:   3'- -GGG-GGCAGGgUGa-GC-GAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 42713 0.72 0.300698
Target:  5'- gCUCCGUCCUccuGCUCGCUgCGCCCcacuUCUGc -3'
miRNA:   3'- gGGGGCAGGG---UGAGCGA-GCGGG----AGGC- -5'
24520 3' -63.4 NC_005264.1 + 56533 0.72 0.307244
Target:  5'- gCCCUG-CCCGC-CGCagcugUCGCUCUCCGa -3'
miRNA:   3'- gGGGGCaGGGUGaGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 149780 0.72 0.313227
Target:  5'- cUCCCCGcccgaaaauucucUCCC-CUCGUcgcccUCGUCCUCCGa -3'
miRNA:   3'- -GGGGGC-------------AGGGuGAGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 30754 0.72 0.313227
Target:  5'- cUCCCCGcccgaaaauucucUCCC-CUCGUcgcccUCGUCCUCCGa -3'
miRNA:   3'- -GGGGGC-------------AGGGuGAGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 122514 0.72 0.313897
Target:  5'- aCCCCUgGUCCCgacacuGCUgCGCUCGCCgUCUa -3'
miRNA:   3'- -GGGGG-CAGGG------UGA-GCGAGCGGgAGGc -5'
24520 3' -63.4 NC_005264.1 + 56980 0.71 0.371019
Target:  5'- uCCCUCGUCgCCcgcGCUCGCUUGCUUUCg- -3'
miRNA:   3'- -GGGGGCAG-GG---UGAGCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 61390 0.7 0.410155
Target:  5'- cUCCCCGUUCCAggCGCuccuUCGCCgCUuCCGg -3'
miRNA:   3'- -GGGGGCAGGGUgaGCG----AGCGG-GA-GGC- -5'
24520 3' -63.4 NC_005264.1 + 14416 0.7 0.410155
Target:  5'- aCUCCGUCCCACgcccguauggCgGCcUGCCCUCCc -3'
miRNA:   3'- gGGGGCAGGGUGa---------G-CGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 70704 0.7 0.426513
Target:  5'- uUCCCC-UCCCACUCGgUCGCCgaacgCUgCGc -3'
miRNA:   3'- -GGGGGcAGGGUGAGCgAGCGG-----GAgGC- -5'
24520 3' -63.4 NC_005264.1 + 128348 0.7 0.434836
Target:  5'- gCCCCCcauUCCCGC-CGaaCGUCCUCCu -3'
miRNA:   3'- -GGGGGc--AGGGUGaGCgaGCGGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.