miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 3' -63.4 NC_005264.1 + 496 0.67 0.588145
Target:  5'- cCCCCCG-CUC-CUCcCUCcuCCCUCCGu -3'
miRNA:   3'- -GGGGGCaGGGuGAGcGAGc-GGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 1966 0.69 0.441561
Target:  5'- cCCCCCGagcUCCCAUaugcacuUCcuuuccaucuuauGCUCGCCUUCCc -3'
miRNA:   3'- -GGGGGC---AGGGUG-------AG-------------CGAGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 7355 0.68 0.495565
Target:  5'- gCCUCGUCagACUCGgcuaUCGCCCUCgCGu -3'
miRNA:   3'- gGGGGCAGggUGAGCg---AGCGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 12629 1.1 0.000724
Target:  5'- cCCCCCGUCCCACUCGCUCGCCCUCCGg -3'
miRNA:   3'- -GGGGGCAGGGUGAGCGAGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 14416 0.7 0.410155
Target:  5'- aCUCCGUCCCACgcccguauggCgGCcUGCCCUCCc -3'
miRNA:   3'- gGGGGCAGGGUGa---------G-CGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 19994 0.67 0.59764
Target:  5'- --aCCGaCCgCGCUCGCUCGCa-UCCGg -3'
miRNA:   3'- gggGGCaGG-GUGAGCGAGCGggAGGC- -5'
24520 3' -63.4 NC_005264.1 + 27691 0.66 0.645324
Target:  5'- gCCUCUGcCUCGCcgaCGCUCGCUCUCa- -3'
miRNA:   3'- -GGGGGCaGGGUGa--GCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 30253 0.78 0.137574
Target:  5'- uCCCCgGUCCCGCccgCGC-CGCUCUCCu -3'
miRNA:   3'- -GGGGgCAGGGUGa--GCGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 30490 0.68 0.495565
Target:  5'- gCCCCUcuccUCCUGCUcCGCgcggcCGUCCUCCGg -3'
miRNA:   3'- -GGGGGc---AGGGUGA-GCGa----GCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 30529 0.68 0.499154
Target:  5'- gCUCCaCGaCCCGcCUCGCuggcgcgaacccucgUCGUCCUCCGa -3'
miRNA:   3'- -GGGG-GCaGGGU-GAGCG---------------AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 30754 0.72 0.313227
Target:  5'- cUCCCCGcccgaaaauucucUCCC-CUCGUcgcccUCGUCCUCCGa -3'
miRNA:   3'- -GGGGGC-------------AGGGuGAGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 33085 0.67 0.588145
Target:  5'- gCCgCUCGUuucCCCGCUUGCUUGCUCgCUGa -3'
miRNA:   3'- -GG-GGGCA---GGGUGAGCGAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 34733 0.66 0.645324
Target:  5'- gCCCCag-CUgGCaUCGCUCGUCCUCa- -3'
miRNA:   3'- -GGGGgcaGGgUG-AGCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 35036 0.67 0.578679
Target:  5'- gUCCUGgccgacgCCCGC-CGUUCGCCuCUCCc -3'
miRNA:   3'- gGGGGCa------GGGUGaGCGAGCGG-GAGGc -5'
24520 3' -63.4 NC_005264.1 + 36038 0.66 0.635779
Target:  5'- uCCCagCGcCCC-CUCGCUCaguGCCCgacugCCGa -3'
miRNA:   3'- -GGGg-GCaGGGuGAGCGAG---CGGGa----GGC- -5'
24520 3' -63.4 NC_005264.1 + 37759 0.66 0.664379
Target:  5'- aCCUgCUGUCCUGCUUGagaCUCGCCUUCgCGc -3'
miRNA:   3'- -GGG-GGCAGGGUGAGC---GAGCGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 38499 0.68 0.531946
Target:  5'- cUCCCCGuacUCCCGCcagUCGCcCGCCC-CaCGg -3'
miRNA:   3'- -GGGGGC---AGGGUG---AGCGaGCGGGaG-GC- -5'
24520 3' -63.4 NC_005264.1 + 38544 0.73 0.28171
Target:  5'- cCCCgCCGUCCgGCcgCGaCUCGCCUcCCGg -3'
miRNA:   3'- -GGG-GGCAGGgUGa-GC-GAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 38684 0.69 0.443252
Target:  5'- gCCCCCGucguaauuUCCUACguaggucccaGCUCGCCC-CCa -3'
miRNA:   3'- -GGGGGC--------AGGGUGag--------CGAGCGGGaGGc -5'
24520 3' -63.4 NC_005264.1 + 39323 0.66 0.645324
Target:  5'- cCCCCC--UCCGCUCGCga-CCCUCgCGc -3'
miRNA:   3'- -GGGGGcaGGGUGAGCGagcGGGAG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.