miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 3' -63.4 NC_005264.1 + 157928 0.68 0.513624
Target:  5'- cUCCUCGUUCgCAUcuucgUCGCUCGCC-UCCGc -3'
miRNA:   3'- -GGGGGCAGG-GUG-----AGCGAGCGGgAGGC- -5'
24520 3' -63.4 NC_005264.1 + 159455 0.69 0.443252
Target:  5'- aCCCCgCGUUCCGgagaagccCUCGC-CGCCC-CCa -3'
miRNA:   3'- -GGGG-GCAGGGU--------GAGCGaGCGGGaGGc -5'
24520 3' -63.4 NC_005264.1 + 120992 0.69 0.448345
Target:  5'- cCCCCCGagcUCCCAUaugcacuUCcuuucccaucuuauGCUCGCCUUCCc -3'
miRNA:   3'- -GGGGGC---AGGGUG-------AG--------------CGAGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 117840 0.69 0.477799
Target:  5'- gCUCUCGUCgCCGuuCUCGCcaggcUCGCCCUCUu -3'
miRNA:   3'- -GGGGGCAG-GGU--GAGCG-----AGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 159151 0.69 0.477799
Target:  5'- aUCgCCGUCCUcCUCGuCUCGCCg-CCGa -3'
miRNA:   3'- -GGgGGCAGGGuGAGC-GAGCGGgaGGC- -5'
24520 3' -63.4 NC_005264.1 + 63752 0.69 0.486644
Target:  5'- cCCUCCGggCCCuaucuuCUCGCUCGgCCUUgGc -3'
miRNA:   3'- -GGGGGCa-GGGu-----GAGCGAGCgGGAGgC- -5'
24520 3' -63.4 NC_005264.1 + 126382 0.68 0.495565
Target:  5'- gCCUCGUCagACUCGgcuaUCGCCCUCgCGu -3'
miRNA:   3'- gGGGGCAGggUGAGCg---AGCGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 149517 0.68 0.495565
Target:  5'- gCCCCUcuccUCCUGCUcCGCgcggcCGUCCUCCGg -3'
miRNA:   3'- -GGGGGc---AGGGUGA-GCGa----GCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 149556 0.68 0.499154
Target:  5'- gCUCCaCGaCCCGcCUCGCuggcgcgaacccucgUCGUCCUCCGa -3'
miRNA:   3'- -GGGG-GCaGGGU-GAGCG---------------AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 157710 0.69 0.443252
Target:  5'- gCCCCCGucguaauuUCCUACguaggucccaGCUCGCCC-CCa -3'
miRNA:   3'- -GGGGGC--------AGGGUGag--------CGAGCGGGaGGc -5'
24520 3' -63.4 NC_005264.1 + 98168 0.69 0.443252
Target:  5'- aCUCuuGUUCCGCaUGUcuaggCGCCCUCCGg -3'
miRNA:   3'- -GGGggCAGGGUGaGCGa----GCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 61390 0.7 0.410155
Target:  5'- cUCCCCGUUCCAggCGCuccuUCGCCgCUuCCGg -3'
miRNA:   3'- -GGGGGCAGGGUgaGCG----AGCGG-GA-GGC- -5'
24520 3' -63.4 NC_005264.1 + 149280 0.78 0.137574
Target:  5'- uCCCCgGUCCCGCccgCGC-CGCUCUCCu -3'
miRNA:   3'- -GGGGgCAGGGUGa--GCGaGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 159934 0.75 0.205531
Target:  5'- aCUCCGUCgCuCUCGCcgUCGCCCUCCc -3'
miRNA:   3'- gGGGGCAGgGuGAGCG--AGCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 160228 0.74 0.252197
Target:  5'- gCCCCG-CCUGCUCgGCUCGCgCCUUCu -3'
miRNA:   3'- gGGGGCaGGGUGAG-CGAGCG-GGAGGc -5'
24520 3' -63.4 NC_005264.1 + 157571 0.73 0.28171
Target:  5'- cCCCgCCGUCCgGCcgCGaCUCGCCUcCCGg -3'
miRNA:   3'- -GGG-GGCAGGgUGa-GC-GAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 42713 0.72 0.300698
Target:  5'- gCUCCGUCCUccuGCUCGCUgCGCCCcacuUCUGc -3'
miRNA:   3'- gGGGGCAGGG---UGAGCGA-GCGGG----AGGC- -5'
24520 3' -63.4 NC_005264.1 + 56533 0.72 0.307244
Target:  5'- gCCCUG-CCCGC-CGCagcugUCGCUCUCCGa -3'
miRNA:   3'- gGGGGCaGGGUGaGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 149780 0.72 0.313227
Target:  5'- cUCCCCGcccgaaaauucucUCCC-CUCGUcgcccUCGUCCUCCGa -3'
miRNA:   3'- -GGGGGC-------------AGGGuGAGCG-----AGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 56980 0.71 0.371019
Target:  5'- uCCCUCGUCgCCcgcGCUCGCUUGCUUUCg- -3'
miRNA:   3'- -GGGGGCAG-GG---UGAGCGAGCGGGAGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.