miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 5' -52.6 NC_005264.1 + 131692 1.13 0.0039
Target:  5'- aCACGAAACCUAGAACCGCACGGGUCCg -3'
miRNA:   3'- -GUGCUUUGGAUCUUGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 12665 1.13 0.0039
Target:  5'- aCACGAAACCUAGAACCGCACGGGUCCg -3'
miRNA:   3'- -GUGCUUUGGAUCUUGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 133972 0.84 0.248059
Target:  5'- uCAUGAAACCUAGc-CCGCGCGGG-CCg -3'
miRNA:   3'- -GUGCUUUGGAUCuuGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 152843 0.8 0.407784
Target:  5'- cUACGggGCUcgucgagggcucguUGGGcucggcaucGCCGCACGGGUCCg -3'
miRNA:   3'- -GUGCuuUGG--------------AUCU---------UGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 33817 0.8 0.407784
Target:  5'- cUACGggGCUcgucgagggcucguUGGGcucggcaucGCCGCACGGGUCCg -3'
miRNA:   3'- -GUGCuuUGG--------------AUCU---------UGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 12826 0.78 0.503063
Target:  5'- cCGCGAAAC--AGAGCCGUucucCGGGUCCu -3'
miRNA:   3'- -GUGCUUUGgaUCUUGGCGu---GCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 131852 0.78 0.503063
Target:  5'- cCGCGAAAC--AGAGCCGUucucCGGGUCCu -3'
miRNA:   3'- -GUGCUUUGgaUCUUGGCGu---GCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 40706 0.77 0.552704
Target:  5'- cUACGAAggggGCCgGGAAUCGCccgaACGGGUCCu -3'
miRNA:   3'- -GUGCUU----UGGaUCUUGGCG----UGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 159732 0.77 0.552704
Target:  5'- cUACGAAggggGCCgGGAAUCGCccgaACGGGUCCu -3'
miRNA:   3'- -GUGCUU----UGGaUCUUGGCG----UGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 16329 0.77 0.583195
Target:  5'- aCGCGuAGCuCUGGAACCGCGCGGc-CCa -3'
miRNA:   3'- -GUGCuUUG-GAUCUUGGCGUGCCcaGG- -5'
24520 5' -52.6 NC_005264.1 + 2890 0.76 0.634629
Target:  5'- gUAC-AGACUgcGAACCGCACGGG-CCa -3'
miRNA:   3'- -GUGcUUUGGauCUUGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 146487 0.75 0.665526
Target:  5'- aGCaGAAGCCUAuggucucccuGGGCCGCGCGGuUCCa -3'
miRNA:   3'- gUG-CUUUGGAU----------CUUGGCGUGCCcAGG- -5'
24520 5' -52.6 NC_005264.1 + 50310 0.75 0.686002
Target:  5'- gGCGGuuacGGCCUGGAGCCGCgaguacGCGGcGUCg -3'
miRNA:   3'- gUGCU----UUGGAUCUUGGCG------UGCC-CAGg -5'
24520 5' -52.6 NC_005264.1 + 92419 0.74 0.706296
Target:  5'- aCGCGGggAACCUGaacGAGCCGCAC-GGUCUc -3'
miRNA:   3'- -GUGCU--UUGGAU---CUUGGCGUGcCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 142787 0.74 0.716352
Target:  5'- aCGCGGAcagguAUCUGGAcgugacGCUGCACGGGUgCg -3'
miRNA:   3'- -GUGCUU-----UGGAUCU------UGGCGUGCCCAgG- -5'
24520 5' -52.6 NC_005264.1 + 43126 0.74 0.726335
Target:  5'- gCGCGguGCCUGGAcACCuaaGCACGGGUg- -3'
miRNA:   3'- -GUGCuuUGGAUCU-UGG---CGUGCCCAgg -5'
24520 5' -52.6 NC_005264.1 + 162153 0.74 0.726335
Target:  5'- gCGCGguGCCUGGAcACCuaaGCACGGGUg- -3'
miRNA:   3'- -GUGCuuUGGAUCU-UGG---CGUGCCCAgg -5'
24520 5' -52.6 NC_005264.1 + 100072 0.74 0.726335
Target:  5'- uGCGggGCCUAGGGCguaGCAUGGcGgCCg -3'
miRNA:   3'- gUGCuuUGGAUCUUGg--CGUGCC-CaGG- -5'
24520 5' -52.6 NC_005264.1 + 48062 0.73 0.755751
Target:  5'- cCGCGggGCUgcuguuuucaUAGcgcaauacucgcGGCCGCGCGGGUUCu -3'
miRNA:   3'- -GUGCuuUGG----------AUC------------UUGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 20621 0.73 0.774824
Target:  5'- gUACaGAACCUAGGggcacugggcgACCGUugGcGGUCCa -3'
miRNA:   3'- -GUGcUUUGGAUCU-----------UGGCGugC-CCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.