miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 5' -52.6 NC_005264.1 + 132204 0.69 0.931869
Target:  5'- gACGAcGACCUAcGcGCUGCGCGcGGaUCCg -3'
miRNA:   3'- gUGCU-UUGGAU-CuUGGCGUGC-CC-AGG- -5'
24520 5' -52.6 NC_005264.1 + 150134 0.7 0.902547
Target:  5'- cCGCGGu-CCUAGGAuccggucCCGgGCGuGGUCCg -3'
miRNA:   3'- -GUGCUuuGGAUCUU-------GGCgUGC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 128114 0.7 0.915382
Target:  5'- aGCGAuGCCagcUGGGGCCGaaUAUGGGUCUu -3'
miRNA:   3'- gUGCUuUGG---AUCUUGGC--GUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 159293 0.69 0.92112
Target:  5'- gCACGAgagAugCUGGAcgccGCCGCGuCGcGGUUCg -3'
miRNA:   3'- -GUGCU---UugGAUCU----UGGCGU-GC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 39630 0.69 0.92112
Target:  5'- aCACGgcGCUgUGGuuuuGCCGCGCGGccucGUCCa -3'
miRNA:   3'- -GUGCuuUGG-AUCu---UGGCGUGCC----CAGG- -5'
24520 5' -52.6 NC_005264.1 + 84444 0.69 0.92112
Target:  5'- aCACGAAGCUguuccAGAuuGCCGCGugcauCGGGUgCg -3'
miRNA:   3'- -GUGCUUUGGa----UCU--UGGCGU-----GCCCAgG- -5'
24520 5' -52.6 NC_005264.1 + 126172 0.69 0.92112
Target:  5'- gACGAAACgUGGucgcGGCCagguccauccgcGCACGGGUCg -3'
miRNA:   3'- gUGCUUUGgAUC----UUGG------------CGUGCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 131738 0.69 0.926616
Target:  5'- -cCGGAuCCUAGGACCGCGgccCGGGa-- -3'
miRNA:   3'- guGCUUuGGAUCUUGGCGU---GCCCagg -5'
24520 5' -52.6 NC_005264.1 + 80310 0.69 0.928746
Target:  5'- --aGAAGCCUauccagauccgugccAGAcaauggcuCCGCGCGGGUCg -3'
miRNA:   3'- gugCUUUGGA---------------UCUu-------GGCGUGCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 122774 0.71 0.883114
Target:  5'- aGCGggGCCUcuuGCCGCcggggcgcuGCGGGcCCu -3'
miRNA:   3'- gUGCuuUGGAucuUGGCG---------UGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 3831 0.72 0.837028
Target:  5'- gCGCgGAGACCUGcu-CCugGCAUGGGUCCu -3'
miRNA:   3'- -GUG-CUUUGGAUcuuGG--CGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 40800 0.72 0.828645
Target:  5'- aGCGGAGCCgcuuGCCGCG-GGGUCg -3'
miRNA:   3'- gUGCUUUGGaucuUGGCGUgCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 133972 0.84 0.248059
Target:  5'- uCAUGAAACCUAGc-CCGCGCGGG-CCg -3'
miRNA:   3'- -GUGCUUUGGAUCuuGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 152843 0.8 0.407784
Target:  5'- cUACGggGCUcgucgagggcucguUGGGcucggcaucGCCGCACGGGUCCg -3'
miRNA:   3'- -GUGCuuUGG--------------AUCU---------UGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 131852 0.78 0.503063
Target:  5'- cCGCGAAAC--AGAGCCGUucucCGGGUCCu -3'
miRNA:   3'- -GUGCUUUGgaUCUUGGCGu---GCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 159732 0.77 0.552704
Target:  5'- cUACGAAggggGCCgGGAAUCGCccgaACGGGUCCu -3'
miRNA:   3'- -GUGCUU----UGGaUCUUGGCG----UGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 2890 0.76 0.634629
Target:  5'- gUAC-AGACUgcGAACCGCACGGG-CCa -3'
miRNA:   3'- -GUGcUUUGGauCUUGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 146487 0.75 0.665526
Target:  5'- aGCaGAAGCCUAuggucucccuGGGCCGCGCGGuUCCa -3'
miRNA:   3'- gUG-CUUUGGAU----------CUUGGCGUGCCcAGG- -5'
24520 5' -52.6 NC_005264.1 + 142787 0.74 0.716352
Target:  5'- aCGCGGAcagguAUCUGGAcgugacGCUGCACGGGUgCg -3'
miRNA:   3'- -GUGCUU-----UGGAUCU------UGGCGUGCCCAgG- -5'
24520 5' -52.6 NC_005264.1 + 162153 0.74 0.726335
Target:  5'- gCGCGguGCCUGGAcACCuaaGCACGGGUg- -3'
miRNA:   3'- -GUGCuuUGGAUCU-UGG---CGUGCCCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.