miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 5' -52.6 NC_005264.1 + 2890 0.76 0.634629
Target:  5'- gUAC-AGACUgcGAACCGCACGGG-CCa -3'
miRNA:   3'- -GUGcUUUGGauCUUGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 2983 0.68 0.950469
Target:  5'- cCACGAAuccaucgagcGCCgacuGGGCCGgcggcucggcuCugGGGUCCg -3'
miRNA:   3'- -GUGCUU----------UGGau--CUUGGC-----------GugCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 3748 0.71 0.883114
Target:  5'- aGCGggGCCUcuuGCCGCcggggcgcuGCGGGcCCu -3'
miRNA:   3'- gUGCuuUGGAucuUGGCG---------UGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 3831 0.72 0.837028
Target:  5'- gCGCgGAGACCUGcu-CCugGCAUGGGUCCu -3'
miRNA:   3'- -GUG-CUUUGGAUcuuGG--CGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 4241 0.66 0.98832
Target:  5'- aCGCGAAGguagaucaguCCcGGcuuGCCGCGCGGGaaCCg -3'
miRNA:   3'- -GUGCUUU----------GGaUCu--UGGCGUGCCCa-GG- -5'
24520 5' -52.6 NC_005264.1 + 5607 0.68 0.961951
Target:  5'- gGCGA--CC-GGAGCCGCuauCGGG-CCg -3'
miRNA:   3'- gUGCUuuGGaUCUUGGCGu--GCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 5836 0.67 0.979987
Target:  5'- cCGCGAaagcuugagguaucgGACCUuuaGGAagacccgcGCCGCgaGCGuGGUCCa -3'
miRNA:   3'- -GUGCU---------------UUGGA---UCU--------UGGCG--UGC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 6134 0.66 0.981272
Target:  5'- uCGCGAAGcaccgcccguCCUGGGucUCGCGCGGG-CUg -3'
miRNA:   3'- -GUGCUUU----------GGAUCUu-GGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 7145 0.69 0.92112
Target:  5'- gACGAAACgUGGucgcGGCCagguccauccgcGCACGGGUCg -3'
miRNA:   3'- gUGCUUUGgAUC----UUGG------------CGUGCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 7978 0.69 0.931869
Target:  5'- cCACGAAGuCCgugcacGGGCCGCcauuGCGGGgCCg -3'
miRNA:   3'- -GUGCUUU-GGau----CUUGGCG----UGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 9087 0.7 0.915382
Target:  5'- aGCGAuGCCagcUGGGGCCGaaUAUGGGUCUu -3'
miRNA:   3'- gUGCUuUGG---AUCUUGGC--GUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 10488 0.67 0.968489
Target:  5'- -uCGGAACCUGcuacgaaucGAuuucgguacucGCCGaGCGGGUCCu -3'
miRNA:   3'- guGCUUUGGAU---------CU-----------UGGCgUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 12665 1.13 0.0039
Target:  5'- aCACGAAACCUAGAACCGCACGGGUCCg -3'
miRNA:   3'- -GUGCUUUGGAUCUUGGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 12712 0.69 0.926616
Target:  5'- -cCGGAuCCUAGGACCGCGgccCGGGa-- -3'
miRNA:   3'- guGCUUuGGAUCUUGGCGU---GCCCagg -5'
24520 5' -52.6 NC_005264.1 + 12826 0.78 0.503063
Target:  5'- cCGCGAAAC--AGAGCCGUucucCGGGUCCu -3'
miRNA:   3'- -GUGCUUUGgaUCUUGGCGu---GCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 13177 0.69 0.931869
Target:  5'- gACGAcGACCUAcGcGCUGCGCGcGGaUCCg -3'
miRNA:   3'- gUGCU-UUGGAU-CuUGGCGUGC-CC-AGG- -5'
24520 5' -52.6 NC_005264.1 + 16080 0.66 0.985112
Target:  5'- gCGCGgcGCUUGcuGuuGC-CGGGUCCg -3'
miRNA:   3'- -GUGCuuUGGAUcuUggCGuGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 16329 0.77 0.583195
Target:  5'- aCGCGuAGCuCUGGAACCGCGCGGc-CCa -3'
miRNA:   3'- -GUGCuUUG-GAUCUUGGCGUGCCcaGG- -5'
24520 5' -52.6 NC_005264.1 + 16439 0.68 0.961951
Target:  5'- cCGCGggGCCU---GCC-CGCGGGUg- -3'
miRNA:   3'- -GUGCuuUGGAucuUGGcGUGCCCAgg -5'
24520 5' -52.6 NC_005264.1 + 20621 0.73 0.774824
Target:  5'- gUACaGAACCUAGGggcacugggcgACCGUugGcGGUCCa -3'
miRNA:   3'- -GUGcUUUGGAUCU-----------UGGCGugC-CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.