miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 3' -62.9 NC_005264.1 + 130807 1.1 0.000712
Target:  5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3'
miRNA:   3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 11781 1.1 0.000712
Target:  5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3'
miRNA:   3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 22878 0.8 0.096097
Target:  5'- gGGUUCGCAgcauCUCCGGGcagGGCCCGAGGg -3'
miRNA:   3'- -CCGAGCGU----GAGGCCCcg-UCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 941 0.73 0.280119
Target:  5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3'
miRNA:   3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 119967 0.73 0.280119
Target:  5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3'
miRNA:   3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 66605 0.71 0.347648
Target:  5'- gGGCUgCGcCGCguugCCGGcgccgucGCGGCCCGAGGc -3'
miRNA:   3'- -CCGA-GC-GUGa---GGCCc------CGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 112331 0.71 0.370053
Target:  5'- aGCUCGUguucgGCUUCGaGGGCAGCUuUGGGGa -3'
miRNA:   3'- cCGAGCG-----UGAGGC-CCCGUCGG-GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 100471 0.71 0.377738
Target:  5'- aGUUCGCugUCgCGGcGGCcagGGCCCugGAGGg -3'
miRNA:   3'- cCGAGCGugAG-GCC-CCG---UCGGG--CUCC- -5'
24523 3' -62.9 NC_005264.1 + 132494 0.71 0.385529
Target:  5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3'
miRNA:   3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5'
24523 3' -62.9 NC_005264.1 + 13467 0.71 0.385529
Target:  5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3'
miRNA:   3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5'
24523 3' -62.9 NC_005264.1 + 89019 0.7 0.393426
Target:  5'- aGCUCGCGCaugUCGGGGCAcucGCCUGuGu -3'
miRNA:   3'- cCGAGCGUGa--GGCCCCGU---CGGGCuCc -5'
24523 3' -62.9 NC_005264.1 + 101748 0.7 0.409531
Target:  5'- uGGCggCGCGCUCCccaaaggacguGGuGGCGGCCCuGAacGGa -3'
miRNA:   3'- -CCGa-GCGUGAGG-----------CC-CCGUCGGG-CU--CC- -5'
24523 3' -62.9 NC_005264.1 + 27411 0.7 0.417735
Target:  5'- aGGCgauaUCGCGCUCgGGGGCAugaUGAGGc -3'
miRNA:   3'- -CCG----AGCGUGAGgCCCCGUcggGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 16544 0.69 0.468975
Target:  5'- cGCUUGCGCguauuucagcgCgGuGGGCGGCgCCGGGGc -3'
miRNA:   3'- cCGAGCGUGa----------GgC-CCCGUCG-GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 78686 0.69 0.468975
Target:  5'- cGGCgcgCGCGCUgcgaccacuucCCGGGGCucgcgagcuGCCgCGAGa -3'
miRNA:   3'- -CCGa--GCGUGA-----------GGCCCCGu--------CGG-GCUCc -5'
24523 3' -62.9 NC_005264.1 + 9551 0.69 0.477827
Target:  5'- cGCUCGCAg-CCGGuGGCGGCuaGcAGGu -3'
miRNA:   3'- cCGAGCGUgaGGCC-CCGUCGggC-UCC- -5'
24523 3' -62.9 NC_005264.1 + 68978 0.68 0.495774
Target:  5'- uGGCUCGCcaGCUuaGcGGGCcaguGGCCCGcGGc -3'
miRNA:   3'- -CCGAGCG--UGAggC-CCCG----UCGGGCuCC- -5'
24523 3' -62.9 NC_005264.1 + 25640 0.68 0.504861
Target:  5'- gGGC-CGCGCUCCGcGuuuuccucaaucGGCAcGUCUGGGGg -3'
miRNA:   3'- -CCGaGCGUGAGGC-C------------CCGU-CGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 22640 0.68 0.511265
Target:  5'- uGGCUCGCcagguauagcaaguGCUUUugGGGGCGGUcgUCGGGGu -3'
miRNA:   3'- -CCGAGCG--------------UGAGG--CCCCGUCG--GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 131977 0.68 0.532533
Target:  5'- gGGCUCGCgACgacaggCCGGuGGCGGUgggCCGAccGGc -3'
miRNA:   3'- -CCGAGCG-UGa-----GGCC-CCGUCG---GGCU--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.