miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 3' -62.9 NC_005264.1 + 122089 0.66 0.656712
Target:  5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3'
miRNA:   3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 126102 0.67 0.589321
Target:  5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3'
miRNA:   3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 37914 0.67 0.597954
Target:  5'- gGGCUCGCguaauucGCUCCGuGGUcuuuaugauaGGCCaUGGGGg -3'
miRNA:   3'- -CCGAGCG-------UGAGGCcCCG----------UCGG-GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 80568 0.66 0.617197
Target:  5'- cGGCggacccuUCGCGCUCCGGuGCcGCCUGucGc -3'
miRNA:   3'- -CCG-------AGCGUGAGGCCcCGuCGGGCucC- -5'
24523 3' -62.9 NC_005264.1 + 138445 0.66 0.61816
Target:  5'- uGCUCGCgaucuaccucGCcgCCGGGGgAGCCgCGAa- -3'
miRNA:   3'- cCGAGCG----------UGa-GGCCCCgUCGG-GCUcc -5'
24523 3' -62.9 NC_005264.1 + 162692 0.66 0.61816
Target:  5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3'
miRNA:   3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 80339 0.66 0.6278
Target:  5'- uGGCUcCGCGCgggUCGGGuCGGUUgGAGGc -3'
miRNA:   3'- -CCGA-GCGUGa--GGCCCcGUCGGgCUCC- -5'
24523 3' -62.9 NC_005264.1 + 12747 0.66 0.656712
Target:  5'- cGCUgGCA-UCCuuaacccauGGGGCAGCgCCGGGc -3'
miRNA:   3'- cCGAgCGUgAGG---------CCCCGUCG-GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 129327 0.66 0.656712
Target:  5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3'
miRNA:   3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 24860 0.67 0.570223
Target:  5'- cGGCgaaGUcuuACcggagCCGGGGCGGCaCGAGGc -3'
miRNA:   3'- -CCGag-CG---UGa----GGCCCCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 125114 0.67 0.560729
Target:  5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3'
miRNA:   3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5'
24523 3' -62.9 NC_005264.1 + 122389 0.67 0.560729
Target:  5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3'
miRNA:   3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5'
24523 3' -62.9 NC_005264.1 + 119967 0.73 0.280119
Target:  5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3'
miRNA:   3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 66605 0.71 0.347648
Target:  5'- gGGCUgCGcCGCguugCCGGcgccgucGCGGCCCGAGGc -3'
miRNA:   3'- -CCGA-GC-GUGa---GGCCc------CGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 112331 0.71 0.370053
Target:  5'- aGCUCGUguucgGCUUCGaGGGCAGCUuUGGGGa -3'
miRNA:   3'- cCGAGCG-----UGAGGC-CCCGUCGG-GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 132494 0.71 0.385529
Target:  5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3'
miRNA:   3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5'
24523 3' -62.9 NC_005264.1 + 27411 0.7 0.417735
Target:  5'- aGGCgauaUCGCGCUCgGGGGCAugaUGAGGc -3'
miRNA:   3'- -CCG----AGCGUGAGgCCCCGUcggGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 16544 0.69 0.468975
Target:  5'- cGCUUGCGCguauuucagcgCgGuGGGCGGCgCCGGGGc -3'
miRNA:   3'- cCGAGCGUGa----------GgC-CCCGUCG-GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 9551 0.69 0.477827
Target:  5'- cGCUCGCAg-CCGGuGGCGGCuaGcAGGu -3'
miRNA:   3'- cCGAGCGUgaGGCC-CCGUCGggC-UCC- -5'
24523 3' -62.9 NC_005264.1 + 150787 0.68 0.541879
Target:  5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3'
miRNA:   3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.