miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 3' -62.9 NC_005264.1 + 941 0.73 0.280119
Target:  5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3'
miRNA:   3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 3062 0.66 0.656712
Target:  5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3'
miRNA:   3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 3362 0.67 0.560729
Target:  5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3'
miRNA:   3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5'
24523 3' -62.9 NC_005264.1 + 6087 0.67 0.560729
Target:  5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3'
miRNA:   3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5'
24523 3' -62.9 NC_005264.1 + 7075 0.67 0.589321
Target:  5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3'
miRNA:   3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 9551 0.69 0.477827
Target:  5'- cGCUCGCAg-CCGGuGGCGGCuaGcAGGu -3'
miRNA:   3'- cCGAGCGUgaGGCC-CCGUCGggC-UCC- -5'
24523 3' -62.9 NC_005264.1 + 10300 0.66 0.656712
Target:  5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3'
miRNA:   3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 11781 1.1 0.000712
Target:  5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3'
miRNA:   3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 12747 0.66 0.656712
Target:  5'- cGCUgGCA-UCCuuaacccauGGGGCAGCgCCGGGc -3'
miRNA:   3'- cCGAgCGUgAGG---------CCCCGUCG-GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 13467 0.71 0.385529
Target:  5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3'
miRNA:   3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5'
24523 3' -62.9 NC_005264.1 + 16429 0.66 0.666323
Target:  5'- cGCUCG-ACUgCCgcGGGGCcuGCCCGcGGg -3'
miRNA:   3'- cCGAGCgUGA-GG--CCCCGu-CGGGCuCC- -5'
24523 3' -62.9 NC_005264.1 + 16544 0.69 0.468975
Target:  5'- cGCUUGCGCguauuucagcgCgGuGGGCGGCgCCGGGGc -3'
miRNA:   3'- cCGAGCGUGa----------GgC-CCCGUCG-GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 22640 0.68 0.511265
Target:  5'- uGGCUCGCcagguauagcaaguGCUUUugGGGGCGGUcgUCGGGGu -3'
miRNA:   3'- -CCGAGCG--------------UGAGG--CCCCGUCG--GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 22878 0.8 0.096097
Target:  5'- gGGUUCGCAgcauCUCCGGGcagGGCCCGAGGg -3'
miRNA:   3'- -CCGAGCGU----GAGGCCCcg-UCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 24860 0.67 0.570223
Target:  5'- cGGCgaaGUcuuACcggagCCGGGGCGGCaCGAGGc -3'
miRNA:   3'- -CCGag-CG---UGa----GGCCCCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 25640 0.68 0.504861
Target:  5'- gGGC-CGCGCUCCGcGuuuuccucaaucGGCAcGUCUGGGGg -3'
miRNA:   3'- -CCGaGCGUGAGGC-C------------CCGU-CGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 27411 0.7 0.417735
Target:  5'- aGGCgauaUCGCGCUCgGGGGCAugaUGAGGc -3'
miRNA:   3'- -CCG----AGCGUGAGgCCCCGUcggGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 31761 0.68 0.541879
Target:  5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3'
miRNA:   3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5'
24523 3' -62.9 NC_005264.1 + 37914 0.67 0.597954
Target:  5'- gGGCUCGCguaauucGCUCCGuGGUcuuuaugauaGGCCaUGGGGg -3'
miRNA:   3'- -CCGAGCG-------UGAGGCcCCG----------UCGG-GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 41500 0.66 0.666323
Target:  5'- aGCUCGCcaACUCCuccuuaaggugcGGGaGCAGCCCc--- -3'
miRNA:   3'- cCGAGCG--UGAGG------------CCC-CGUCGGGcucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.