miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 5' -49.7 NC_005264.1 + 28080 0.66 0.998238
Target:  5'- cCGUCU-UCG-UCAAAGU-CAGGCGu- -3'
miRNA:   3'- -GCAGAuAGCgAGUUUCAuGUCCGCug -5'
24527 5' -49.7 NC_005264.1 + 30100 0.66 0.998238
Target:  5'- ----aAUCGCgagUCGAGaUGCGGGCGGCg -3'
miRNA:   3'- gcagaUAGCG---AGUUUcAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 58442 0.66 0.997889
Target:  5'- gCGUC-GUCGUUCcAGGUuguCGGGCGcCa -3'
miRNA:   3'- -GCAGaUAGCGAGuUUCAu--GUCCGCuG- -5'
24527 5' -49.7 NC_005264.1 + 110132 0.66 0.997483
Target:  5'- cCGcCg--CGCUUuuGGggGCGGGCGGCg -3'
miRNA:   3'- -GCaGauaGCGAGuuUCa-UGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 9545 0.67 0.996474
Target:  5'- -cUUUGUCGCUCGcAGccGguGGCGGCu -3'
miRNA:   3'- gcAGAUAGCGAGUuUCa-UguCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 26741 0.67 0.996474
Target:  5'- uCGUCgucGUCGCUCAucGUua--GCGACa -3'
miRNA:   3'- -GCAGa--UAGCGAGUuuCAugucCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 13891 0.67 0.995857
Target:  5'- gCGUC-GUCGC-C----UGCAGGCGACg -3'
miRNA:   3'- -GCAGaUAGCGaGuuucAUGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 42003 0.67 0.995857
Target:  5'- uGUCUucgUGCUCGucGgcCAcGGCGGCa -3'
miRNA:   3'- gCAGAua-GCGAGUuuCauGU-CCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 98658 0.67 0.995857
Target:  5'- gGUUcc-UGCUCGAcccAGUGCuGGCGGCg -3'
miRNA:   3'- gCAGauaGCGAGUU---UCAUGuCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 93227 0.67 0.995857
Target:  5'- aGcCUGUCGUUCucacgcCGGGCGGCg -3'
miRNA:   3'- gCaGAUAGCGAGuuucauGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 131415 0.67 0.995154
Target:  5'- uGUUUGUgGUUUAgcuAAGUGC-GGCGGCa -3'
miRNA:   3'- gCAGAUAgCGAGU---UUCAUGuCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 57969 0.67 0.995154
Target:  5'- uGcCUAUCGUcaUCGGAGUccccGCGcGGCGGCc -3'
miRNA:   3'- gCaGAUAGCG--AGUUUCA----UGU-CCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 82239 0.67 0.994357
Target:  5'- uGUCUcguUUGCUUucGGggcucgcgACAGGCGGCa -3'
miRNA:   3'- gCAGAu--AGCGAGuuUCa-------UGUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 97129 0.67 0.994357
Target:  5'- -cUCUGa-GCUCAAGGgcUACAGGCGGu -3'
miRNA:   3'- gcAGAUagCGAGUUUC--AUGUCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 8646 0.67 0.993458
Target:  5'- aCGUCUAcguuUCGCgCGAAGUAuuCGGGCa-- -3'
miRNA:   3'- -GCAGAU----AGCGaGUUUCAU--GUCCGcug -5'
24527 5' -49.7 NC_005264.1 + 9276 0.67 0.993458
Target:  5'- gCGUUcuUCGUaguccaggCAGGGUGgAGGCGACg -3'
miRNA:   3'- -GCAGauAGCGa-------GUUUCAUgUCCGCUG- -5'
24527 5' -49.7 NC_005264.1 + 30478 0.68 0.991317
Target:  5'- aGUC--UCGCUCGAGcugacGUACAGGUaGCg -3'
miRNA:   3'- gCAGauAGCGAGUUU-----CAUGUCCGcUG- -5'
24527 5' -49.7 NC_005264.1 + 113368 0.68 0.991317
Target:  5'- cCGUCgaauacggCGCgggUCAGGGUuauGCAGGCGAg -3'
miRNA:   3'- -GCAGaua-----GCG---AGUUUCA---UGUCCGCUg -5'
24527 5' -49.7 NC_005264.1 + 48766 0.68 0.988657
Target:  5'- --cCUGUCGUUCGacauaGAGUGCAaGGcCGGCg -3'
miRNA:   3'- gcaGAUAGCGAGU-----UUCAUGU-CC-GCUG- -5'
24527 5' -49.7 NC_005264.1 + 147674 0.68 0.988657
Target:  5'- aCGUUcgaUGUCGCUCGgucguccaGAG-ACGGGCGGu -3'
miRNA:   3'- -GCAG---AUAGCGAGU--------UUCaUGUCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.