miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24530 3' -60.2 NC_005264.1 + 127836 1.1 0.001113
Target:  5'- cUCCUCUUCGAGCGCCGCUCGCGGCACg -3'
miRNA:   3'- -AGGAGAAGCUCGCGGCGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 8810 1.1 0.001113
Target:  5'- cUCCUCUUCGAGCGCCGCUCGCGGCACg -3'
miRNA:   3'- -AGGAGAAGCUCGCGGCGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 116903 0.77 0.208733
Target:  5'- aCCUa---GAGCGCUGUUCGCGGUACc -3'
miRNA:   3'- aGGAgaagCUCGCGGCGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 114453 0.76 0.218949
Target:  5'- gCCUCgacgaacgUCGAGCGCCuCgaCGCGGCACu -3'
miRNA:   3'- aGGAGa-------AGCUCGCGGcGa-GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 85026 0.75 0.283596
Target:  5'- gUCCUCUUCGuccGCGCCGUcaaugccgucugcgcCGCGGUGCg -3'
miRNA:   3'- -AGGAGAAGCu--CGCGGCGa--------------GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 61448 0.74 0.293407
Target:  5'- cUCCUCggcgccgaguugcUCGAGCGCCGUUCGUucuaGCGCg -3'
miRNA:   3'- -AGGAGa------------AGCUCGCGGCGAGCGc---CGUG- -5'
24530 3' -60.2 NC_005264.1 + 65379 0.73 0.350946
Target:  5'- gUCCUCUUCcAGCGgCGCUacgucuaucagaucCGCGGCGg -3'
miRNA:   3'- -AGGAGAAGcUCGCgGCGA--------------GCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 64261 0.73 0.368681
Target:  5'- aCUggggCUgCGGGCGCCGUUCaucuuGCGGCGCa -3'
miRNA:   3'- aGGa---GAaGCUCGCGGCGAG-----CGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 104798 0.71 0.426315
Target:  5'- cUCCUCUUucgcgagacgagCGGGCGCCGCaCGaCGGCc- -3'
miRNA:   3'- -AGGAGAA------------GCUCGCGGCGaGC-GCCGug -5'
24530 3' -60.2 NC_005264.1 + 70114 0.71 0.434977
Target:  5'- aCCUUaUCGAGCuGCCGCguacucccgcgUGCGGCAa -3'
miRNA:   3'- aGGAGaAGCUCG-CGGCGa----------GCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 125521 0.71 0.442859
Target:  5'- aUCCUCgugUCGAGagaaggcggguguUGCUGCggcUGCGGCGCa -3'
miRNA:   3'- -AGGAGa--AGCUC-------------GCGGCGa--GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 6994 0.71 0.44374
Target:  5'- cUCCUCcUCG-GCGUgGCcCGCGGCGg -3'
miRNA:   3'- -AGGAGaAGCuCGCGgCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 126021 0.71 0.44374
Target:  5'- cUCCUCcUCG-GCGUgGCcCGCGGCGg -3'
miRNA:   3'- -AGGAGaAGCuCGCGgCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 127387 0.71 0.452601
Target:  5'- aCCg--UCGcugaugcuuaccGGCGCCGgaCGCGGCGCg -3'
miRNA:   3'- aGGagaAGC------------UCGCGGCgaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 8360 0.71 0.452601
Target:  5'- aCCg--UCGcugaugcuuaccGGCGCCGgaCGCGGCGCg -3'
miRNA:   3'- aGGagaAGC------------UCGCGGCgaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 4775 0.71 0.452601
Target:  5'- cCUUCUgCGcGGCGCCGUUCGC-GCACc -3'
miRNA:   3'- aGGAGAaGC-UCGCGGCGAGCGcCGUG- -5'
24530 3' -60.2 NC_005264.1 + 26350 0.71 0.470607
Target:  5'- aCCUUagucUUGuGCGCCGCggcaggcugCGCGGCGCc -3'
miRNA:   3'- aGGAGa---AGCuCGCGGCGa--------GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 39197 0.7 0.479746
Target:  5'- --aUUUUCGAGaacgcgccuaCGCCGC-CGCGGCGCu -3'
miRNA:   3'- aggAGAAGCUC----------GCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 102223 0.7 0.479746
Target:  5'- cUCCUgcgCGAGCcgGCUGC-CGCGGCAUa -3'
miRNA:   3'- -AGGAgaaGCUCG--CGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 48365 0.7 0.479746
Target:  5'- gCCUCguugCGcAGUGCCGCgUCGaGGCGCu -3'
miRNA:   3'- aGGAGaa--GC-UCGCGGCG-AGCgCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.