miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24530 3' -60.2 NC_005264.1 + 128512 0.68 0.634574
Target:  5'- aCCUCgcgucagCGAGUcaGCCaGCgucaggCGCGGCGCc -3'
miRNA:   3'- aGGAGaa-----GCUCG--CGG-CGa-----GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 135183 0.69 0.536247
Target:  5'- aCCUCggucCGAGCGCCGC--GUGGC-Ca -3'
miRNA:   3'- aGGAGaa--GCUCGCGGCGagCGCCGuG- -5'
24530 3' -60.2 NC_005264.1 + 75084 0.69 0.545902
Target:  5'- -gUUCUUCGcGGCGCUGCggcaggCGCcGGCGCc -3'
miRNA:   3'- agGAGAAGC-UCGCGGCGa-----GCG-CCGUG- -5'
24530 3' -60.2 NC_005264.1 + 52920 0.69 0.563415
Target:  5'- gCCaCUUCGAGgggcauugcaugGCCGCgccCGCGGCGCa -3'
miRNA:   3'- aGGaGAAGCUCg-----------CGGCGa--GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 45896 0.69 0.585016
Target:  5'- aCUUCagUGuauuGCGCCGC-CGCGGCAa -3'
miRNA:   3'- aGGAGaaGCu---CGCGGCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 123623 0.69 0.585016
Target:  5'- cCCUCccCGccAGCGCCGCg-GCGGCGu -3'
miRNA:   3'- aGGAGaaGC--UCGCGGCGagCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 69346 0.68 0.594889
Target:  5'- aCCUCgacUCuGGC-CCGUUUGUGGCGCg -3'
miRNA:   3'- aGGAGa--AGcUCGcGGCGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 36093 0.68 0.624638
Target:  5'- cUCUCUUCG-GCGCgGCUgGCagaugGGUACu -3'
miRNA:   3'- aGGAGAAGCuCGCGgCGAgCG-----CCGUG- -5'
24530 3' -60.2 NC_005264.1 + 115927 0.68 0.624638
Target:  5'- gUCCU---UGAGaGCCGCgaacaCGCGGCGCa -3'
miRNA:   3'- -AGGAgaaGCUCgCGGCGa----GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 3967 0.69 0.536247
Target:  5'- gCCUgUUCGGGUaugcuguuaGCCGCUUcgGCGGCGg -3'
miRNA:   3'- aGGAgAAGCUCG---------CGGCGAG--CGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 117502 0.7 0.517124
Target:  5'- gCCUCgucUCGGGCGCgGCgcgucUGCGGuCGCu -3'
miRNA:   3'- aGGAGa--AGCUCGCGgCGa----GCGCC-GUG- -5'
24530 3' -60.2 NC_005264.1 + 82185 0.7 0.507664
Target:  5'- cCCUCUUgaaGAGCgGCCGUgUCGUGGcCGCg -3'
miRNA:   3'- aGGAGAAg--CUCG-CGGCG-AGCGCC-GUG- -5'
24530 3' -60.2 NC_005264.1 + 61448 0.74 0.293407
Target:  5'- cUCCUCggcgccgaguugcUCGAGCGCCGUUCGUucuaGCGCg -3'
miRNA:   3'- -AGGAGa------------AGCUCGCGGCGAGCGc---CGUG- -5'
24530 3' -60.2 NC_005264.1 + 126021 0.71 0.44374
Target:  5'- cUCCUCcUCG-GCGUgGCcCGCGGCGg -3'
miRNA:   3'- -AGGAGaAGCuCGCGgCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 4775 0.71 0.452601
Target:  5'- cCUUCUgCGcGGCGCCGUUCGC-GCACc -3'
miRNA:   3'- aGGAGAaGC-UCGCGGCGAGCGcCGUG- -5'
24530 3' -60.2 NC_005264.1 + 127387 0.71 0.452601
Target:  5'- aCCg--UCGcugaugcuuaccGGCGCCGgaCGCGGCGCg -3'
miRNA:   3'- aGGagaAGC------------UCGCGGCgaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 48365 0.7 0.479746
Target:  5'- gCCUCguugCGcAGUGCCGCgUCGaGGCGCu -3'
miRNA:   3'- aGGAGaa--GC-UCGCGGCG-AGCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 158224 0.7 0.479746
Target:  5'- --aUUUUCGAGaacgcgccuaCGCCGC-CGCGGCGCu -3'
miRNA:   3'- aggAGAAGCUC----------GCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 130792 0.7 0.488045
Target:  5'- gUCUCUcCGGGCGCCugGCUCGCacuccggGGCAg -3'
miRNA:   3'- aGGAGAaGCUCGCGG--CGAGCG-------CCGUg -5'
24530 3' -60.2 NC_005264.1 + 149394 0.7 0.488971
Target:  5'- gCCcCUUCG-GCGCCGC-CGCGuCGCg -3'
miRNA:   3'- aGGaGAAGCuCGCGGCGaGCGCcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.