miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24530 3' -60.2 NC_005264.1 + 2939 0.67 0.654434
Target:  5'- cUCCagcgugCUUUGAGaaaCGCgGCUCGCcGGCAUa -3'
miRNA:   3'- -AGGa-----GAAGCUC---GCGgCGAGCG-CCGUG- -5'
24530 3' -60.2 NC_005264.1 + 3967 0.69 0.536247
Target:  5'- gCCUgUUCGGGUaugcuguuaGCCGCUUcgGCGGCGg -3'
miRNA:   3'- aGGAgAAGCUCG---------CGGCGAG--CGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 4596 0.69 0.585016
Target:  5'- cCCUCccCGccAGCGCCGCg-GCGGCGu -3'
miRNA:   3'- aGGAGaaGC--UCGCGGCGagCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 4775 0.71 0.452601
Target:  5'- cCUUCUgCGcGGCGCCGUUCGC-GCACc -3'
miRNA:   3'- aGGAGAaGC-UCGCGGCGAGCGcCGUG- -5'
24530 3' -60.2 NC_005264.1 + 6461 0.66 0.760739
Target:  5'- cUCCUCggCG-GCGCgGCgaacgUCGgGGUGCg -3'
miRNA:   3'- -AGGAGaaGCuCGCGgCG-----AGCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 6994 0.71 0.44374
Target:  5'- cUCCUCcUCG-GCGUgGCcCGCGGCGg -3'
miRNA:   3'- -AGGAGaAGCuCGCGgCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 8360 0.71 0.452601
Target:  5'- aCCg--UCGcugaugcuuaccGGCGCCGgaCGCGGCGCg -3'
miRNA:   3'- aGGagaAGC------------UCGCGGCgaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 8810 1.1 0.001113
Target:  5'- cUCCUCUUCGAGCGCCGCUCGCGGCACg -3'
miRNA:   3'- -AGGAGAAGCUCGCGGCGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 9485 0.68 0.634574
Target:  5'- aCCUCgcgucagCGAGUcaGCCaGCgucaggCGCGGCGCc -3'
miRNA:   3'- aGGAGaa-----GCUCG--CGG-CGa-----GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 9545 0.68 0.644509
Target:  5'- -aCUCUUCGAcGCGUCGCcCGCGccuCGCu -3'
miRNA:   3'- agGAGAAGCU-CGCGGCGaGCGCc--GUG- -5'
24530 3' -60.2 NC_005264.1 + 10529 0.66 0.732564
Target:  5'- gUCCUgUgCG-GCGCCGCccUCaGgGGCGCg -3'
miRNA:   3'- -AGGAgAaGCuCGCGGCG--AG-CgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 11766 0.7 0.488045
Target:  5'- gUCUCUcCGGGCGCCugGCUCGCacuccggGGCAg -3'
miRNA:   3'- aGGAGAaGCUCGCGG--CGAGCG-------CCGUg -5'
24530 3' -60.2 NC_005264.1 + 11959 0.66 0.748635
Target:  5'- gCCUga-CGAGgucgcgccaugucuUGCCGCgCGCGGCACg -3'
miRNA:   3'- aGGAgaaGCUC--------------GCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 15561 0.67 0.703652
Target:  5'- aUCCUCaaCGGcGUGCaGCUCGUGGC-Ca -3'
miRNA:   3'- -AGGAGaaGCU-CGCGgCGAGCGCCGuG- -5'
24530 3' -60.2 NC_005264.1 + 21762 0.68 0.634574
Target:  5'- gCCgUCUU-GAGCGCCGUaacuuUgGCGGCAg -3'
miRNA:   3'- aGG-AGAAgCUCGCGGCG-----AgCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 25085 0.67 0.693889
Target:  5'- cCCUUUUCG-GCGCCGgggacaaGCGGgGCa -3'
miRNA:   3'- aGGAGAAGCuCGCGGCgag----CGCCgUG- -5'
24530 3' -60.2 NC_005264.1 + 26122 0.69 0.554638
Target:  5'- aCCUCUUCcgcgucuaccaGGGCcaugaugucccagGCCGCggcgaggacuuUCGCGGCACu -3'
miRNA:   3'- aGGAGAAG-----------CUCG-------------CGGCG-----------AGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 26350 0.71 0.470607
Target:  5'- aCCUUagucUUGuGCGCCGCggcaggcugCGCGGCGCc -3'
miRNA:   3'- aGGAGa---AGCuCGCGGCGa--------GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 30071 0.66 0.732564
Target:  5'- cCCUCgUCG-GCGCCGC-CGCGcccGgACa -3'
miRNA:   3'- aGGAGaAGCuCGCGGCGaGCGC---CgUG- -5'
24530 3' -60.2 NC_005264.1 + 30367 0.7 0.488971
Target:  5'- gCCcCUUCG-GCGCCGC-CGCGuCGCg -3'
miRNA:   3'- aGGaGAAGCuCGCGGCGaGCGCcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.