Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24538 | 5' | -55 | NC_005264.1 | + | 123394 | 1.08 | 0.003689 |
Target: 5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3' miRNA: 3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 4367 | 1.08 | 0.003689 |
Target: 5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3' miRNA: 3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 146268 | 0.82 | 0.19664 |
Target: 5'- uCAUGUgcgCCGCCGCCCCGGCGc-- -3' miRNA: 3'- cGUACGaaaGGUGGCGGGGCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 85931 | 0.78 | 0.343094 |
Target: 5'- cGCGU-CUgaggCCACCGUCCCGGCAAu- -3' miRNA: 3'- -CGUAcGAaa--GGUGGCGGGGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 30075 | 0.74 | 0.533283 |
Target: 5'- cGUcgGCg--CCGCCGCgCCCGGaCAGAAu -3' miRNA: 3'- -CGuaCGaaaGGUGGCG-GGGCC-GUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 158560 | 0.73 | 0.552553 |
Target: 5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3' miRNA: 3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 39533 | 0.73 | 0.552553 |
Target: 5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3' miRNA: 3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 115023 | 0.72 | 0.615566 |
Target: 5'- uGCAgGCUcUUCUGCgccuuaugCGCCCCGGCGAAAg -3' miRNA: 3'- -CGUaCGA-AAGGUG--------GCGGGGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 12019 | 0.72 | 0.615566 |
Target: 5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3' miRNA: 3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 131046 | 0.72 | 0.615566 |
Target: 5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3' miRNA: 3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 36976 | 0.72 | 0.619734 |
Target: 5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3' miRNA: 3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 156003 | 0.72 | 0.619734 |
Target: 5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3' miRNA: 3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 114218 | 0.72 | 0.625988 |
Target: 5'- cGCcgGCUUgcCCACCuCCCCGGCc--- -3' miRNA: 3'- -CGuaCGAAa-GGUGGcGGGGCCGuuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 151831 | 0.72 | 0.661409 |
Target: 5'- aGCGUaGCggaagacuggggCCGCCGCUCCGGCGGc- -3' miRNA: 3'- -CGUA-CGaaa---------GGUGGCGGGGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 156886 | 0.71 | 0.678001 |
Target: 5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3' miRNA: 3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 37860 | 0.71 | 0.678001 |
Target: 5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3' miRNA: 3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 146323 | 0.7 | 0.718958 |
Target: 5'- gGCGUGCUUguaccaUCCGuCUGCgCCGGCGu-- -3' miRNA: 3'- -CGUACGAA------AGGU-GGCGgGGCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 51423 | 0.7 | 0.738018 |
Target: 5'- cGCAUGgUUUCCggcagGCCGCCCUccacgaccuuguuGGCGAu- -3' miRNA: 3'- -CGUACgAAAGG-----UGGCGGGG-------------CCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 61428 | 0.7 | 0.748899 |
Target: 5'- cGUAUGCUUUCgGCgGCCCgcuccuCGGCGc-- -3' miRNA: 3'- -CGUACGAAAGgUGgCGGG------GCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 38108 | 0.69 | 0.787285 |
Target: 5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3' miRNA: 3'- cguACGAAAGGUGGCGGggCCGUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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