Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24538 | 5' | -55 | NC_005264.1 | + | 3476 | 0.68 | 0.831944 |
Target: 5'- gGCGauggGCUUgCCGCCGCaCgCGGCGGGGg -3' miRNA: 3'- -CGUa---CGAAaGGUGGCG-GgGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 3976 | 0.69 | 0.805646 |
Target: 5'- gGUAUGCUguuaGCCGCUUCGGCGGc- -3' miRNA: 3'- -CGUACGAaaggUGGCGGGGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 4367 | 1.08 | 0.003689 |
Target: 5'- aGCAUGCUUUCCACCGCCCCGGCAAAAc -3' miRNA: 3'- -CGUACGAAAGGUGGCGGGGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 7933 | 0.65 | 0.934676 |
Target: 5'- cGCGUccacGCgucgUCCACgGCCgCGGCGu-- -3' miRNA: 3'- -CGUA----CGaa--AGGUGgCGGgGCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 12019 | 0.72 | 0.615566 |
Target: 5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3' miRNA: 3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 15349 | 0.68 | 0.854963 |
Target: 5'- uGCGUGCggaaccucugCCACacacuaGCCCCGGUg--- -3' miRNA: 3'- -CGUACGaaa-------GGUGg-----CGGGGCCGuuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 24347 | 0.66 | 0.912486 |
Target: 5'- gGCGggGCauauccCCGCCGCUCUGGCAu-- -3' miRNA: 3'- -CGUa-CGaaa---GGUGGCGGGGCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 24643 | 0.65 | 0.934676 |
Target: 5'- cGCAUGCUUaauccCCACgGUUCUGGCc--- -3' miRNA: 3'- -CGUACGAAa----GGUGgCGGGGCCGuuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 27889 | 0.67 | 0.879255 |
Target: 5'- uCGUGuCUggCCAgCGUCUCGGCGAGGg -3' miRNA: 3'- cGUAC-GAaaGGUgGCGGGGCCGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 30075 | 0.74 | 0.533283 |
Target: 5'- cGUcgGCg--CCGCCGCgCCCGGaCAGAAu -3' miRNA: 3'- -CGuaCGaaaGGUGGCG-GGGCC-GUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 30847 | 0.68 | 0.848547 |
Target: 5'- cGCcgGUcggcCCACCGCCaCCGGCc--- -3' miRNA: 3'- -CGuaCGaaa-GGUGGCGG-GGCCGuuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 33507 | 0.66 | 0.906321 |
Target: 5'- -aGUGCgcgUCGCUGCgCCCGGUAGGc -3' miRNA: 3'- cgUACGaaaGGUGGCG-GGGCCGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 36976 | 0.72 | 0.619734 |
Target: 5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3' miRNA: 3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 37860 | 0.71 | 0.678001 |
Target: 5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3' miRNA: 3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 38088 | 0.66 | 0.9295 |
Target: 5'- cCGUGCUUccUUgGCC-CCCCGGgAAGAa -3' miRNA: 3'- cGUACGAA--AGgUGGcGGGGCCgUUUU- -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 38108 | 0.69 | 0.787285 |
Target: 5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3' miRNA: 3'- cguACGAAAGGUGGCGGggCCGUuuu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 39131 | 0.66 | 0.924077 |
Target: 5'- cGCG-GCg--CCACuCGCCCCGacGCAGGu -3' miRNA: 3'- -CGUaCGaaaGGUG-GCGGGGC--CGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 39533 | 0.73 | 0.552553 |
Target: 5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3' miRNA: 3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 40740 | 0.68 | 0.856546 |
Target: 5'- cGCG-GCagagUUCACgGCCUCGGCAAAu -3' miRNA: 3'- -CGUaCGaa--AGGUGgCGGGGCCGUUUu -5' |
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24538 | 5' | -55 | NC_005264.1 | + | 43549 | 0.68 | 0.823356 |
Target: 5'- uGCA-GCUgcccagCCACCGCgagcaaCCGGCGAGu -3' miRNA: 3'- -CGUaCGAaa----GGUGGCGg-----GGCCGUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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