Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24538 | 5' | -55 | NC_005264.1 | + | 63038 | 0.67 | 0.871907 |
Target: 5'- gGUcgGCga-CCAUCGCCUCGGCc--- -3' miRNA: 3'- -CGuaCGaaaGGUGGCGGGGCCGuuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 98079 | 0.69 | 0.796543 |
Target: 5'- uGCAUGgUgugCCccgGCCGCCCCGGgGu-- -3' miRNA: 3'- -CGUACgAaa-GG---UGGCGGGGCCgUuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 3976 | 0.69 | 0.805646 |
Target: 5'- gGUAUGCUguuaGCCGCUUCGGCGGc- -3' miRNA: 3'- -CGUACGAaaggUGGCGGGGCCGUUuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 43549 | 0.68 | 0.823356 |
Target: 5'- uGCA-GCUgcccagCCACCGCgagcaaCCGGCGAGu -3' miRNA: 3'- -CGUaCGAaa----GGUGGCGg-----GGCCGUUUu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 76661 | 0.68 | 0.823356 |
Target: 5'- -gAUGCgg-CCACCGgUgCGGCAGAAg -3' miRNA: 3'- cgUACGaaaGGUGGCgGgGCCGUUUU- -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 45901 | 0.68 | 0.831944 |
Target: 5'- -aGUGUaUUgCGCCGCCgCGGCAAu- -3' miRNA: 3'- cgUACGaAAgGUGGCGGgGCCGUUuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 122503 | 0.68 | 0.831944 |
Target: 5'- gGCGauggGCUUgCCGCCGCaCgCGGCGGGGg -3' miRNA: 3'- -CGUa---CGAAaGGUGGCG-GgGCCGUUUU- -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 30847 | 0.68 | 0.848547 |
Target: 5'- cGCcgGUcggcCCACCGCCaCCGGCc--- -3' miRNA: 3'- -CGuaCGaaa-GGUGGCGG-GGCCGuuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 40740 | 0.68 | 0.856546 |
Target: 5'- cGCG-GCagagUUCACgGCCUCGGCAAAu -3' miRNA: 3'- -CGUaCGaa--AGGUGgCGGGGCCGUUUu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 157135 | 0.69 | 0.787285 |
Target: 5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3' miRNA: 3'- cguACGAAAGGUGGCGGggCCGUuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 61428 | 0.7 | 0.748899 |
Target: 5'- cGUAUGCUUUCgGCgGCCCgcuccuCGGCGc-- -3' miRNA: 3'- -CGUACGAAAGgUGgCGGG------GCCGUuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 146323 | 0.7 | 0.718958 |
Target: 5'- gGCGUGCUUguaccaUCCGuCUGCgCCGGCGu-- -3' miRNA: 3'- -CGUACGAA------AGGU-GGCGgGGCCGUuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 85931 | 0.78 | 0.343094 |
Target: 5'- cGCGU-CUgaggCCACCGUCCCGGCAAu- -3' miRNA: 3'- -CGUAcGAaa--GGUGGCGGGGCCGUUuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 30075 | 0.74 | 0.533283 |
Target: 5'- cGUcgGCg--CCGCCGCgCCCGGaCAGAAu -3' miRNA: 3'- -CGuaCGaaaGGUGGCG-GGGCC-GUUUU- -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 158560 | 0.73 | 0.552553 |
Target: 5'- aCGUGCUcucugCCGCCGCCCCgcgguucccgcgcGGCAAGc -3' miRNA: 3'- cGUACGAaa---GGUGGCGGGG-------------CCGUUUu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 115023 | 0.72 | 0.615566 |
Target: 5'- uGCAgGCUcUUCUGCgccuuaugCGCCCCGGCGAAAg -3' miRNA: 3'- -CGUaCGA-AAGGUG--------GCGGGGCCGUUUU- -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 131046 | 0.72 | 0.615566 |
Target: 5'- uGCGgcgGCga-CCGCCGCCCUuaGGCGAAGc -3' miRNA: 3'- -CGUa--CGaaaGGUGGCGGGG--CCGUUUU- -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 156003 | 0.72 | 0.619734 |
Target: 5'- uGCGcGCUggcgccauagucgCCGCCGCCuCCGGCAAc- -3' miRNA: 3'- -CGUaCGAaa-----------GGUGGCGG-GGCCGUUuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 114218 | 0.72 | 0.625988 |
Target: 5'- cGCcgGCUUgcCCACCuCCCCGGCc--- -3' miRNA: 3'- -CGuaCGAAa-GGUGGcGGGGCCGuuuu -5' |
|||||||
24538 | 5' | -55 | NC_005264.1 | + | 156886 | 0.71 | 0.678001 |
Target: 5'- cGCGaaUGCg--CCGCUGCCCUGcGCGAGGg -3' miRNA: 3'- -CGU--ACGaaaGGUGGCGGGGC-CGUUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home