Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24546 | 3' | -53.8 | NC_005264.1 | + | 58213 | 0.67 | 0.948133 |
Target: 5'- aCGaGCG-GGCgCCGCaCGAcgGCCUGUCCg -3' miRNA: 3'- -GCaCGUaUUG-GGCGcGCU--UGGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 58368 | 0.68 | 0.934244 |
Target: 5'- --gGCGgGGCCgGCGCGAuaugcGCCggauUGUCCa -3' miRNA: 3'- gcaCGUaUUGGgCGCGCU-----UGG----ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 60809 | 0.68 | 0.934244 |
Target: 5'- -cUGCugcuCCUGCGCGAGCCggcugCCg -3' miRNA: 3'- gcACGuauuGGGCGCGCUUGGaca--GG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 63166 | 0.68 | 0.922143 |
Target: 5'- --gGCAUGAacccugCCGCGUGGGCCccgaaaagcuggaaUGUCCa -3' miRNA: 3'- gcaCGUAUUg-----GGCGCGCUUGG--------------ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 65628 | 0.67 | 0.94374 |
Target: 5'- uCGUGgGU-ACCCGCGCGcgcACCgGUaaCCa -3' miRNA: 3'- -GCACgUAuUGGGCGCGCu--UGGaCA--GG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 66134 | 0.66 | 0.969725 |
Target: 5'- --gGCAUGGCggCGCGCGAGggcgcggcaaauCCUGUCa -3' miRNA: 3'- gcaCGUAUUGg-GCGCGCUU------------GGACAGg -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 66780 | 0.7 | 0.857494 |
Target: 5'- aCGcgGCGcAGCCCaGCGaGAGCCUGUaCCa -3' miRNA: 3'- -GCa-CGUaUUGGG-CGCgCUUGGACA-GG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 73258 | 0.72 | 0.761673 |
Target: 5'- --aGUAgagAugCCGCGCGGGCCauccGUCCa -3' miRNA: 3'- gcaCGUa--UugGGCGCGCUUGGa---CAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 75219 | 0.67 | 0.956222 |
Target: 5'- -cUGCAUcGGCCCuGCGCGGcgGCC-GUCUu -3' miRNA: 3'- gcACGUA-UUGGG-CGCGCU--UGGaCAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 76000 | 0.66 | 0.966671 |
Target: 5'- --cGCAUAAUCgGCGUGAGCacguUCCa -3' miRNA: 3'- gcaCGUAUUGGgCGCGCUUGgac-AGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 78016 | 0.67 | 0.955067 |
Target: 5'- gCGUGCAUGACggcgaggcuucgcuCCGUGCGccaugcCCUG-CCu -3' miRNA: 3'- -GCACGUAUUG--------------GGCGCGCuu----GGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 79147 | 0.69 | 0.906323 |
Target: 5'- cCGUGCcgAACuUCGCGCacACCUG-CCu -3' miRNA: 3'- -GCACGuaUUG-GGCGCGcuUGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 79335 | 0.72 | 0.742412 |
Target: 5'- gCGUGCGUAGCgUGCGCGcugcucUCUGUUCu -3' miRNA: 3'- -GCACGUAUUGgGCGCGCuu----GGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 79648 | 0.66 | 0.969725 |
Target: 5'- --cGCAUAGuuCGCGCcGcGCCUG-CCg -3' miRNA: 3'- gcaCGUAUUggGCGCG-CuUGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 80326 | 0.72 | 0.780474 |
Target: 5'- cCGUGCcagacaAUGGCuCCGCGCGggUCggGUCg -3' miRNA: 3'- -GCACG------UAUUG-GGCGCGCuuGGa-CAGg -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 80517 | 0.68 | 0.929139 |
Target: 5'- ------cGACCCGCGCGgAGCCauUGUCUg -3' miRNA: 3'- gcacguaUUGGGCGCGC-UUGG--ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 82201 | 0.66 | 0.969725 |
Target: 5'- cCGUGuCGUGG-CCGCGCGu-CCaucGUCCu -3' miRNA: 3'- -GCAC-GUAUUgGGCGCGCuuGGa--CAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 84160 | 0.7 | 0.865125 |
Target: 5'- gGUcGCAgcGCgCGCGcCGGACCUGUUUa -3' miRNA: 3'- gCA-CGUauUGgGCGC-GCUUGGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 85200 | 0.66 | 0.975223 |
Target: 5'- gCGgcaCAUGGCCUGCGacaaGAacaACCgUGUCCg -3' miRNA: 3'- -GCac-GUAUUGGGCGCg---CU---UGG-ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 89513 | 0.66 | 0.96204 |
Target: 5'- uCGUGCAgagagcggcaggcGGCCUauugauugGCGCGGGCagUGUCCg -3' miRNA: 3'- -GCACGUa------------UUGGG--------CGCGCUUGg-ACAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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