miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 106611 0.66 0.975223
Target:  5'- uCGUGCAggaucuucgugAGCCCGCG-GuGCUUG-CCg -3'
miRNA:   3'- -GCACGUa----------UUGGGCGCgCuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 105851 0.68 0.939111
Target:  5'- uCGUGCAUGGCCC-UGUucGCCgUGUUCc -3'
miRNA:   3'- -GCACGUAUUGGGcGCGcuUGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 105679 0.66 0.975223
Target:  5'- --gGCGUuuAGCCC-CGCGAACgUGggugCCg -3'
miRNA:   3'- gcaCGUA--UUGGGcGCGCUUGgACa---GG- -5'
24546 3' -53.8 NC_005264.1 + 101920 0.67 0.948133
Target:  5'- gCGUggGCGUGGCaaguguUCGUGCuGAugCUGUCCu -3'
miRNA:   3'- -GCA--CGUAUUG------GGCGCG-CUugGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 98460 0.67 0.952292
Target:  5'- --cGCu--GCCCaGCGCGAACaC-GUCCa -3'
miRNA:   3'- gcaCGuauUGGG-CGCGCUUG-GaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 96843 0.68 0.912384
Target:  5'- gGUGCGcUAACgCCGCGCgcgacgguuuuGAACUUG-CCg -3'
miRNA:   3'- gCACGU-AUUG-GGCGCG-----------CUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 91398 0.77 0.491326
Target:  5'- gCGgcgGCAgagaUAGCCCaguGCGCGAACCUGUgCg -3'
miRNA:   3'- -GCa--CGU----AUUGGG---CGCGCUUGGACAgG- -5'
24546 3' -53.8 NC_005264.1 + 90299 0.69 0.900026
Target:  5'- --cGCAc-GCCaCGCgguacacuucgGCGGGCCUGUCCg -3'
miRNA:   3'- gcaCGUauUGG-GCG-----------CGCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 89513 0.66 0.96204
Target:  5'- uCGUGCAgagagcggcaggcGGCCUauugauugGCGCGGGCagUGUCCg -3'
miRNA:   3'- -GCACGUa------------UUGGG--------CGCGCUUGg-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 85200 0.66 0.975223
Target:  5'- gCGgcaCAUGGCCUGCGacaaGAacaACCgUGUCCg -3'
miRNA:   3'- -GCac-GUAUUGGGCGCg---CU---UGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 84160 0.7 0.865125
Target:  5'- gGUcGCAgcGCgCGCGcCGGACCUGUUUa -3'
miRNA:   3'- gCA-CGUauUGgGCGC-GCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 82201 0.66 0.969725
Target:  5'- cCGUGuCGUGG-CCGCGCGu-CCaucGUCCu -3'
miRNA:   3'- -GCAC-GUAUUgGGCGCGCuuGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 80517 0.68 0.929139
Target:  5'- ------cGACCCGCGCGgAGCCauUGUCUg -3'
miRNA:   3'- gcacguaUUGGGCGCGC-UUGG--ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 80326 0.72 0.780474
Target:  5'- cCGUGCcagacaAUGGCuCCGCGCGggUCggGUCg -3'
miRNA:   3'- -GCACG------UAUUG-GGCGCGCuuGGa-CAGg -5'
24546 3' -53.8 NC_005264.1 + 79648 0.66 0.969725
Target:  5'- --cGCAUAGuuCGCGCcGcGCCUG-CCg -3'
miRNA:   3'- gcaCGUAUUggGCGCG-CuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 79335 0.72 0.742412
Target:  5'- gCGUGCGUAGCgUGCGCGcugcucUCUGUUCu -3'
miRNA:   3'- -GCACGUAUUGgGCGCGCuu----GGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 79147 0.69 0.906323
Target:  5'- cCGUGCcgAACuUCGCGCacACCUG-CCu -3'
miRNA:   3'- -GCACGuaUUG-GGCGCGcuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 78016 0.67 0.955067
Target:  5'- gCGUGCAUGACggcgaggcuucgcuCCGUGCGccaugcCCUG-CCu -3'
miRNA:   3'- -GCACGUAUUG--------------GGCGCGCuu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 76000 0.66 0.966671
Target:  5'- --cGCAUAAUCgGCGUGAGCacguUCCa -3'
miRNA:   3'- gcaCGUAUUGGgCGCGCUUGgac-AGG- -5'
24546 3' -53.8 NC_005264.1 + 75219 0.67 0.956222
Target:  5'- -cUGCAUcGGCCCuGCGCGGcgGCC-GUCUu -3'
miRNA:   3'- gcACGUA-UUGGG-CGCGCU--UGGaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.